YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG13248-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.80
Transmembrane Helix	41	62	0.87
Non-Cytoplasmic	63	71	0.59
Transmembrane Helix	72	92	0.95
Cytoplasmic	93	104	0.66
Transmembrane Helix	105	126	0.83
Non-Cytoplasmic	127	169	0.74
Transmembrane Helix	170	190	0.89
Cytoplasmic	191	198	0.69
Transmembrane Helix	199	219	0.93
Non-Cytoplasmic	220	230	0.91
Transmembrane Helix	231	253	0.88
Cytoplasmic	254	271	0.79
Transmembrane Helix	272	296	0.86
Non-Cytoplasmic	297	320	0.90
Transmembrane Helix	321	342	0.92
Cytoplasmic	343	367	0.86
Transmembrane Helix	368	387	0.94
Non-Cytoplasmic	388	394	0.74
Transmembrane Helix	395	416	0.90
Cytoplasmic	417	485	0.96
Transmembrane Helix	486	505	0.90
Non-Cytoplasmic	506	518	0.77
Transmembrane Helix	519	541	0.92
Cytoplasmic	542	549	0.85
Transmembrane Helix	550	571	0.93
Non-Cytoplasmic	572	578	0.72
Transmembrane Helix	579	598	0.93
Cytoplasmic	599	669	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSRRAILR HILSGICTKM NRTKSVPTDV METPLNRCLN TFDIALLGIG HMVGAGIYVL  60
   61 TGTVAKEMAG PGIILSFILA GFISMLAALC YAEFGTRVPK AGSAYVYTYI SMGEFWAFVI 120
  121 GWNILLEHML GAASVARAWS GYVDSMLGGW IGNTTLELTG GIHEPGLAQY PDVLAFLVCI 180
  181 VYAAALAGGV KATAVFNSLL TLVNIAVMVL VISVGFWYAD GKNWSEAEGG FLPYGVGGVI 240
  241 AGAATCFYAF VGFDSIATSG EEAKNPSVSI PVATVISLFV VTVGYILVSA ALTLMIPISE 300
  301 INPAASLPEA FGQLNLSWAK YLISIGALCG MTTTLLGSLF ALPRCMYAMA SDGLLFSCFG 360
  361 KINPTTQVPL LNLVVSGVMS ACLALVFDLA KLVEFMSIGT LLAYTIVSAS VIILRYRPME 420
  421 RIHTTIRVPA VAGSPDDDDD DDEDVASQSS MDTSSPTSEM IEEVLAGRLK AQFRCLEPLL 480
  481 GRFEPGSVVS VAVMLFIFLS FAICVELKVS WTQLYTGTWW ALIIYGFIIF AAGTCVAVIA 540
  541 VHNQNTRGLI FKVPLVPFVP ALGIFCNILL MVHLDAVTWV RFFVWVCIGM VVYFLYGIRN 600
  601 SKEGEVCSSY SILMTTSEAG KVPWGSFKAT SGGKKSSKHS IFERFTGRSK PEDKKSIVEE 660
  661 SENETSGYS