YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5535-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	53	0.93
Non-Cytoplasmic	54	60	0.85
Transmembrane Helix	61	84	0.90
Cytoplasmic	85	96	0.83
Transmembrane Helix	97	118	0.91
Non-Cytoplasmic	119	158	0.96
Transmembrane Helix	159	180	0.92
Cytoplasmic	181	189	0.82
Transmembrane Helix	190	208	0.96
Non-Cytoplasmic	209	236	0.84
Transmembrane Helix	237	257	0.88
Cytoplasmic	258	269	0.88
Transmembrane Helix	270	289	0.93
Non-Cytoplasmic	290	320	0.86
Transmembrane Helix	321	347	0.81
Cytoplasmic	348	367	0.97
Transmembrane Helix	368	389	0.88
Non-Cytoplasmic	390	395	0.74
Transmembrane Helix	396	416	0.92
Cytoplasmic	417	462	0.98
Transmembrane Helix	463	483	0.92
Non-Cytoplasmic	484	494	0.87
Transmembrane Helix	495	515	0.89
Cytoplasmic	516	525	0.84
Transmembrane Helix	526	547	0.89
Non-Cytoplasmic	548	553	0.78
Transmembrane Helix	554	573	0.94
Cytoplasmic	574	621	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSWSVTNAF RVLTRKKPLE DSNESKLAKV LSAFDLTALG IGSTLGVGVY VLAGEVSKQY  60
   61 AGPAVVVSFL IAAIASIFAG LCYAEFGARV PKAGSAYIYS YVTIGEFIAF LIGWNLILEY 120
  121 AIGSASVVKG LSTYLDQLCG NPMSSFLGTH MPLNIEGMGA YPDLFAFVVT ILFSLAIAVG 180
  181 AKESTRVNNV FTMLNLGVVL FVIIAGLFKV SSSNWSIPKS QVPEGYGDGG FMPYGVSGII 240
  241 KGAAVCFYGF IGFDCIATAG EEAKNPKKSI PFAVIVSLAM IFLAYFGVST VLTMMLPYFE 300
  301 QDEKAPLPHV FRINGWHVAE YVVSIGAMFG LCSSMMGAMF PLPRIVFAMS NDGLLFKFLG 360
  361 DISEKYKTPF KGTMITGMLT GILAAVFNLS QLVNMMSIGT LLAYSMVASC VLMLRYEVDD 420
  421 RRESRIVANG RATGLEQDRP CALWRRIFNL NGQTVPTKQT SRIVTYSVTL FSLWCMVFSQ 480
  481 ILTKFEEDLA NVTSFDGIKL VLGTIPLAVL LLVISRQPTS GVKLSFKVPL VPWLPGISIL 540
  541 INIYLMIKLD ILTWIRFSIW IAIGLAIFLA YGIRHSRLRQ REQRNNSIAM MRDCSNSALL 600
  601 GGQENSKYSN EVPLILMHST S