YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Oatp74D-PA, FBpp...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	169	0.99
Transmembrane Helix	170	191	0.88
Non-Cytoplasmic	192	212	0.86
Transmembrane Helix	213	234	0.93
Cytoplasmic	235	241	0.91
Transmembrane Helix	242	264	0.94
Non-Cytoplasmic	265	331	0.98
Transmembrane Helix	332	358	0.82
Cytoplasmic	359	376	0.85
Transmembrane Helix	377	400	0.84
Non-Cytoplasmic	401	414	0.98
Transmembrane Helix	415	439	0.89
Cytoplasmic	440	482	0.99
Transmembrane Helix	483	505	0.92
Non-Cytoplasmic	506	521	0.94
Transmembrane Helix	522	544	0.95
Cytoplasmic	545	552	0.93
Transmembrane Helix	553	574	0.94
Non-Cytoplasmic	575	667	0.98
Transmembrane Helix	668	693	0.84
Cytoplasmic	694	705	0.88
Transmembrane Helix	706	728	0.89
Non-Cytoplasmic	729	756	0.93
Transmembrane Helix	757	777	0.94
Cytoplasmic	778	819	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSNGDVEA AAQVQSLGGK PSNGHGQLNG NGYHQNGGRR DSSQAFTPLL SQHNNGTTNG  60
   61 EVTTPPPSTV LYESTPSNNN EWKAPEDLGH LKNGLGNILS SNNNGTGNGH SLSEKYAHEQ 120
  121 APLTGGYKLP PRSSESEESD FDSDLNGGSS AESSSSCGLF GCRPRWARRF ASTHVFMVVF 180
  181 LLAYILQGMY MTYFVSVITT IEKLFQIKSK TTGILLSASE MGQICTAMLL TYFAGRGHRP 240
  241 RWIACGMVLF SIAAFSCALP HFIFGEQLMH SSVILQQTQV SPPNNSFSSH WLNASSEQVN 300
  301 PNLCILGGNQ THSGSECNEE RQLEQASHSK ITVIVLCIFF GSLLSSGIGQ TAVATLGIPY 360
  361 IDDNVGSKQS PMYMAVTIGM RILGPASGFI FGSFCTRWYV NFSNPGFDAT DPRWIGAWWL 420
  421 GPVAIGSLML LASIAMFSFP KQLRGKQKPP GQTATPAAPV EPEEKPKLKD FPKTVRRQLS 480
  481 NDILMFRTAS CVFHLLPIAG LYTFLPKYLE TQFRLATYDA NMIAAFCGIL VMGIGIVISG 540
  541 LFILKRKPTA RGVAAWIAFT ALVYSAGMII LMFIGCSMND FAGYKPSDGN SPALIEPTCS 600
  601 AALNCTCDKE NFAPICADGK MYISACHAGC SSSSLRPSDN RTLYSDCACI PDAPEAVNGY 660
  661 CDNNCKNFIY FILIFAICVF MHSTSEVGSM LLVMRCTHPK DKAMAMGVIQ SAIGLFGNVP 720
  721 CPIIYGAVVD SACLIWKSVC GKHGACSLYD ADTFRQYFLG ITAGIMFLAF LMDLVVWRKA 780
  781 HRIDIAPEDP QEGGPASNGR TLEVSESKQP ITPAPDTTV