YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG42514-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.93
Transmembrane Helix	51	73	0.71
Non-Cytoplasmic	74	121	0.89
Transmembrane Helix	122	139	0.92
Cytoplasmic	140	148	0.81
Transmembrane Helix	149	170	0.87
Non-Cytoplasmic	171	180	0.77
Transmembrane Helix	181	202	0.89
Cytoplasmic	203	214	0.84
Transmembrane Helix	215	238	0.87
Non-Cytoplasmic	239	247	0.84
Transmembrane Helix	248	269	0.90
Cytoplasmic	270	312	0.94
Transmembrane Helix	313	328	0.93
Non-Cytoplasmic	329	352	0.90
Transmembrane Helix	353	373	0.80
Cytoplasmic	374	380	0.67
Transmembrane Helix	381	399	0.87
Non-Cytoplasmic	400	405	0.72
Transmembrane Helix	406	427	0.90
Cytoplasmic	428	439	0.84
Transmembrane Helix	440	463	0.73
Non-Cytoplasmic	464	474	0.75
Transmembrane Helix	475	497	0.91
Cytoplasmic	498	531	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSAHSENAA QRRNSRSSEN SEDNENSASG TVREQRDEAA GRTVLQWAWH VVKSTSVEPT  60
   61 MFLYMFAFMI TSVVEQNFFL YKSCRVNRNF TEEICRNLNK PENEEFRTKA MLTNAWFLQW 120
  121 ENISAHVFPI ILALFLGSFS DRRGRKLPLL MGLVGKFFYS TMIVVNARMT TWPVQNIIYS 180
  181 ATLPSALTGA DVAIFASCFA YISDISSLQQ RTIRVTILDV IYLSAMPMGV ALGSHLFYNV 240
  241 FNQSYADMFT VNASLLALAI IYTLCALKWQ TTPRQRSLRE LGCCGFWGDF FDKQHVKDSL 300
  301 AVLVKPRKGH RRSFLIILLV SMALYTFQRD EGQYLYMYTL GKFDWDVSAY SNFKTFKSSA 360
  361 YVIAMLLAVP LMNKILGWRD TTIIFIGTWA HSIARLFFYF ATNTDLLYAG AVVCSLGPIV 420
  421 GPMIRAMTSK IVPTSERGKV FALLSVCDNA VPFISGVCYS QLYRRTQNTN HGGNVFILTI 480
  481 ATQIAVFVMI LCLHIVLGKN SLAVPEVPEK ESGLISQTEA VLEAEIEEHK N