YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG42514-PA, CG42...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.93
Transmembrane Helix	53	75	0.71
Non-Cytoplasmic	76	123	0.89
Transmembrane Helix	124	141	0.92
Cytoplasmic	142	150	0.81
Transmembrane Helix	151	172	0.87
Non-Cytoplasmic	173	182	0.77
Transmembrane Helix	183	204	0.89
Cytoplasmic	205	216	0.84
Transmembrane Helix	217	240	0.87
Non-Cytoplasmic	241	249	0.84
Transmembrane Helix	250	271	0.90
Cytoplasmic	272	314	0.94
Transmembrane Helix	315	330	0.93
Non-Cytoplasmic	331	354	0.90
Transmembrane Helix	355	375	0.80
Cytoplasmic	376	382	0.67
Transmembrane Helix	383	401	0.87
Non-Cytoplasmic	402	407	0.72
Transmembrane Helix	408	429	0.90
Cytoplasmic	430	441	0.84
Transmembrane Helix	442	465	0.73
Non-Cytoplasmic	466	476	0.75
Transmembrane Helix	477	499	0.91
Cytoplasmic	500	533	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTGAHSEN AAQRRNSRSS ENSEDNENSA SGTVREQRDE AAGRTVLQWA WHVVKSTSVE  60
   61 PTMFLYMFAF MITSVVEQNF FLYKSCRVNR NFTEEICRNL NKPENEEFRT KAMLTNAWFL 120
  121 QWENISAHVF PIILALFLGS FSDRRGRKLP LLMGLVGKFF YSTMIVVNAR MTTWPVQNII 180
  181 YSATLPSALT GADVAIFASC FAYISDISSL QQRTIRVTIL DVIYLSAMPM GVALGSHLFY 240
  241 NVFNQSYADM FTVNASLLAL AIIYTLCALK WQTTPRQRSL RELGCCGFWG DFFDKQHVKD 300
  301 SLAVLVKPRK GHRRSFLIIL LVSMALYTFQ RDEGQYLYMY TLGKFDWDVS AYSNFKTFKS 360
  361 SAYVIAMLLA VPLMNKILGW RDTTIIFIGT WAHSIARLFF YFATNTDLLY AGAVVCSLGP 420
  421 IVGPMIRAMT SKIVPTSERG KVFALLSVCD NAVPFISGVC YSQLYRRTQN TNHGGNVFIL 480
  481 TIATQIAVFV MILCLHIVLG KNSLAVPEVP EKESGLISQT EAVLEAEIEE HKN