YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24665354, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.86
Transmembrane Helix	82	104	0.92
Non-Cytoplasmic	105	333	0.98
Transmembrane Helix	334	355	0.95
Cytoplasmic	356	362	0.91
Transmembrane Helix	363	384	0.93
Non-Cytoplasmic	385	391	0.76
Transmembrane Helix	392	410	0.91
Cytoplasmic	411	416	0.84
Transmembrane Helix	417	438	0.86
Non-Cytoplasmic	439	445	0.92
Transmembrane Helix	446	470	0.82
Cytoplasmic	471	815	0.99
Transmembrane Helix	816	837	0.94
Non-Cytoplasmic	838	844	0.80
Transmembrane Helix	845	867	0.92
Cytoplasmic	868	887	0.92
Transmembrane Helix	888	908	0.94
Non-Cytoplasmic	909	973	0.85
Transmembrane Helix	974	994	0.66
Cytoplasmic	995	1014	0.78
Transmembrane Helix	1015	1035	0.87
Non-Cytoplasmic	1036	1662	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHMYNVPCF AGDASNLEAN NPMSSGGGGG TANGPVSPSI SFWFRLNRII LRLCSTHQFK  60
   61 NLQVEMLYQR YFLRMNQSNT THILALLLAL ILALSCTLLV FTTLQLRRST SLLLEISEIG 120
  121 LDANATVGNL TTATMKPPTL ASSDQMTRGS SIPLLALASN GSWAGNGAVG GELKSAHNHN 180
  181 IADFEADHNG QLVWRRQKRK HYRRLHKHRY KHKSHQQHRT RYRMREKRSL QDAGLVKGGG 240
  241 IQTQLIVDTA TDDDADVYTV ASDDDDDVDG GRSAGSKHIT YTPRVRDYNQ ISHAERDEVL 300
  301 NTSSNAGVAT DNSDPPLGYG QLIPLILMQV DESVLVFLIV MLICGIVYAF LLCILSKPAM 360
  361 NEIFLVLVSY VILGTFLAIE VAVSYAMQPS KSFNGSACCI VLIYMTYTML PLRLREALIG 420
  421 GILLSVVHLY TCLRLNAMQD EAVEMIHWEE LLCTLVALLL ANLTGVYTHW PKEKAQRKAF 480
  481 IETRQCIEAR LRTQRENQQQ ERLLLSVLPR HVAMEMKDDI AGQPRDTQFH KIYIQRHENV 540
  541 SILFADICGF TSLSDQCTAE ELVRLLNELF ARFDRLAAEH HCLRIKLLGD CYYCVSGLPE 600
  601 PRPDHAHCAV EMGLDMIDAI ALVREVMAVN VNMRVGIHTG RVHCGVLGLV KWQFDVWSND 660
  661 VTLANHMESG GIPGRVHITK ETLKCLDGDY EVEVGKGNER NSYLKDHQIE TYLIVPGDIY 720
  721 RPHKKSRNRL QVNGNISKEL RMMGHGTAQK HTSKFGFGDS SESAKDPEDE VNEYLMRAID 780
  781 ARSIDHLRAE HCQSLLLCFK DNVLERKYAS EPDRMLCVYF YCSLLVLLGT SIMRLVVFQS 840
  841 SLLTLALSTG ALLLLGFLVF LVACHKINFQ LPSDIKRFSL RIHSNRRISQ LFAFASVALI 900
  901 VLTTLLAMES GRQMELLQRR RFWLDVNGSI SLNDTELNTK MYDAEEPDCD FYLAYNTFLL 960
  961 LTLLSMMSCA TYQVLRILLK LLLLLLASGS YMACSSNLYS RSREMSQELA NEEALLRYII1020
 1021 DSIFLFAFML ALIFHSHQTE ATYRLDFIWK LQATEEKEDM EHLQAYNRKL LENILPVHVA1080
 1081 EHFLSREKHL DDLYHEQCDS VCILFASIPN FSEFYVELEG NNEGVECLRL LNEIIADFDE1140
 1141 LLSEERFRCI EKIKSTGATY MAASGLTANT CDRVNFSHVT AMADYALQLF DKIEEVNMHS1200
 1201 FNNFRMRIGI NIGPVVAGVI GACKPQYDIW GNAVNVASRM DSTGLVDHIQ VTQEMQQILE1260
 1261 GRGFELTCRG SVDVKGKGSM ITYFLKGRRP IDAKELELAK TEVEPPKTLT LAKEPEKLDS1320
 1321 GTATEKQREQ VKEQGSTEQE DDLLPSPDID MNSNMQNLTA QRRKSLCRQH NISSSFGTTV1380
 1381 SSSTGITPSI SNSSSVVTIG ALPAILRGGN PLSNANPNAT DSCSECGGAS KSLATPTAPP1440
 1441 RTLVADLKDE IARDEKIGLK DSIENLEILL KNNISLSDLS NKQQQNLRGE TSSSTTTTLR1500
 1501 KRDTIVSFNV TETVTTTAAP FTSSSGSSNS SSQQKKRRSV TTIAASFTTS TTTRLLSNES1560
 1561 QSSTQTAPGT LESGGSVPGQ SSTENSSQDW QPRTASLEPN RSPIKTSQSM SPIGQLTTEV1620
 1621 FVLPNSRSMV LISSTNGSVS ALATGGGGAS SPRTGLLQDV ST