YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5284-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	133	0.98
Transmembrane Helix	134	156	0.89
Non-Cytoplasmic	157	216	0.94
Transmembrane Helix	217	239	0.83
Cytoplasmic	240	262	0.85
Transmembrane Helix	263	286	0.77
Non-Cytoplasmic	287	319	0.67
Transmembrane Helix	320	344	0.84
Cytoplasmic	345	354	0.66
Transmembrane Helix	355	374	0.70
Non-Cytoplasmic	375	392	0.89
Transmembrane Helix	393	415	0.89
Cytoplasmic	416	432	0.78
Transmembrane Helix	433	454	0.87
Non-Cytoplasmic	455	503	0.94
Transmembrane Helix	504	525	0.87
Cytoplasmic	526	532	0.74
Transmembrane Helix	533	556	0.85
Non-Cytoplasmic	557	577	0.86
Transmembrane Helix	578	602	0.72
Cytoplasmic	603	822	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDITPRSSP GDVIGGGGGG GSSSGYHRET ATESDTERDF GHSGGNGGGN HHNQRTMHQH  60
   61 VPTHSAFGDP MDGALSFYGS SDVQDDIPGI GQYEDFHTID WQRDIARDRM RHRYIVKKRQ 120
  121 DSLWDLIKGS IDAGSGWLCV LLVGIAAGCV AGMVDIGASW MSDLKHGICP PAFWFNREQC 180
  181 CYPAKQSVFE EGNCSTWKTW PEIFGLDRNG TGPYIVAYIW YVLWALLFAS LSASLVRMFA 240
  241 PYACGSGIPE IKTILSGFII RGYLGKWTLL IKSVGLMLSV SAGLTLGKEG PMVHIASCIG 300
  301 NIFSHVFPKY GRNEAKKREI LSAAAAAGVS VAFGAPIGGV LFSLEEVSYY FPLKTLWRSF 360
  361 FCALIAAFVL RSLTPFGNEH SVLFFVEYNK PWIFFELIPF VFLGIMGGVI GTFFIKANLW 420
  421 WCRYRKFSKL GQYPVMEVLF VTLVTAIICY PNPFTRMNMN ELIFLLVSKC SPGDVTNPLC 480
  481 DYKRMNITSG NSFIEVTEPG PGVYSSIWLL MLTFILKLAL TIFTFGMKVP AGLFIPSLLL 540
  541 GAIMGRIVGI GVEQFAYSYP NIWFFTGECA DSNLITPGLY AVVGAAAVLG GVTRMTVSLV 600
  601 VIMFELTGGV RYIVPLMAAA MASKWVGDAL GRQGIYDAHI ALNGYPFLDS KEEFAHTTLA 660
  661 ADVMQPKRNE TLNVITQDSM TVDDVENLLK ETEHNGYPVV VSRENQYLVG FVLRRDLNLA 720
  721 IGNAKRLIEG ISSSSIVLFT SSQPIQNLGP QPLKLKKILD MAPITVTDQT PMETVVDMFR 780
  781 KLGLRQTLVT HNGRLLGVIT KKDVLRHVKQ MDNEDPNTVL FN