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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ome-PF
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNDVSVTE TAQSDQNLMH TKEKKRRVRI ILTVVTTVIA VALLATALVF ILRTDEKDAD  60
   61 DSDSNSNNAI DLEDVLSGQL YAKRFNGSWS NGNSLIYKEN TSIMEFDAKT GERSILLEDA 120
  121 QHYVLYEKSA DGEFLLLAKN YKKNFRYSFL AEYDLYNLNT KEFIQLTIQN EQHYLSMVQW 180
  181 SPVGNALVIN YDRNLYYKES ALAQEIALTS DEQAGILNGI PDWVYEEEVF SSNVATWFNP 240
  241 SGTQLAFIKF DDSSTHLINF PYYGDAGDLR YQYPLHQVIA YPKAGSSNPR VELVMVDLKR 300
  301 AVAGGDFVTV MPVPSALNTE TDYIVTVVSW VDDDNVLSIW MNRIQNAAYV VTFDGLNRKV 360
  361 IYSAESKTGW VDLYTAPFRN RNGSRLAFVL PHNNYKHVQL LSSTVASSEP QALEPLTEGK 420
  421 YVVDSILHWD GKNDIIFYTA NTEDHPEQLH LYAIRALAKQ SPKCLTCNLI KSGDVQQTYF 480
  481 SATFNDNNHI VITSLGPGIP TTHIYEWKYE NSQVVISKVL DWETNESLRA KLKGVALPSH 540
  541 KILTVDIDGG FQAKVLLQLP PNLDTSGATK YPMLVDVYGG PDSYSVTNKW MVDWGTYLSS 600
  601 NQSVIYAKID GRGSGLRGES LLHAIYLKLG TVEISDQINV TQKLSTLFNY IDPDHVGIWG 660
  661 WSYGGYAAAM ALANDEAKVF KCAASIAPVT DWAYYDSIYT ERYMGLPNTN ELGYANSRLS 720
  721 TMAVKLRGKK YLLVHGTLDD NVHYQQAMIL AKNLERQDIL FKQISYADED HGLSNVRPHL 780
  781 YHSLDRFFGE CFASSRLMKS AK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle