YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: snky-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.29
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRVTPPSAT TLSNCTNFGS EGSTRIQCLR RFVTFLLGLV LGFLLWKLAA LNFTLGRLFV  60
   61 NGATDLYVFI IFVLVTGTIF MLSLPVRAVI LLIFVALVGK SGRTYLRAVA FAFIISGPIA 120
  121 NLVENAGEVA RVFVCTTVLT YNLSKTRFDL MAKPFTNTLK HMRGDVEEIR HTFYELQEVL 180
  181 VDLKYAVENS DIEDEKYGDK NTKPIYERWG RETSRMNVSE IGNGGKELPT PAAVQERFQR 240
  241 NMRNRCKHQL RSGHRACLEV FRNGYRKCTT NFPSMIAKAI CWPYRVDIIC ELDLFGNPDK 300
  301 ICDPSAVVPQ NFGETYVELL KAEKKLFDNS SQIVVNYEIK DEQFAKSQLK SAERTGQAFK 360
  361 EDFERQKRIF NKVMGILQKI LCLFMLRMVY VSINYYVKYL NDVEFDNFYI TKYFKHVDQR 420
  421 RKEQRIDAIL PLRTYEKSKY IDVDHIFSRT HHESTTVCFN LLQFLLELVT AGLFILIDHL 480
  481 VVELLQIVRK RSKIVYQQDG EHEVRFNISG VGQMARLLRT TMHNFNIHEK VSTSLSNKEC 540
  541 LPNAHVLPKK MYYQLILLYL IIIVLIYQST TFLRMRRVIC SFFYYKREKQ RILFLYNRIL 600
  601 RNRLRSLEFL IHDAEDNLAT HRIQQQVNVF LWLRFSCPVA FGWIRHFKFA KRTCMICRGL 660
  661 EDSTFTVCGN CGLPYCDDCA EDLNSVCFQC GVVLTRGAEG SESSVEVYTY RKEK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle