YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6404-PB, CG6404-PA
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAHRMQLWR TTNAAMAMTS AAGRFTPQAS TGSRRDLYLQ RITRGSSLPL AAPEKWSNLG  60
   61 QLRFASGGAT AAGVSATKGE EFMQAVPKTE LVDLPDIPAA PVPPPADGLN VMDVMNAAGE 120
  121 PSFASIGLGG WSPVGMVQNC LEFLHCTWDI PWWGTIAIGT LAVRTIIFPL VILAQRNSAK 180
  181 MNNNMPQMQM LQLKMTEARQ SGNAIESARY AQEMMLFMRE KGVNPLKNMV VPLAQAPLFI 240
  241 SFFMGLRQMA NAPVESMRDG GLFWFTDLTM ADPFYLLPLI TSATLYLTIE IGTDSARLSA 300
  301 ANMNTMKYVL RALPIVIFPF TMNFPAAILT YWACSNFISL GQVAVLRIPS VREYFKIEKM 360
  361 LTHAPSALPP KKGFVGGMKE SWDNMKISKE IEERQRLDEI RFAKAGKGPL VKTYKFDPTK 420
  421 VAKPISAEPH MRLKEPPNKQ G

Type	Start	End	Confidence
Cytoplasmic	1	120	0.49
Transmembrane Helix	121	135	0.42
Non-Cytoplasmic	136	151	0.75
Transmembrane Helix	152	173	0.90
Cytoplasmic	174	224	0.96
Transmembrane Helix	225	246	0.86
Non-Cytoplasmic	247	270	0.86
Transmembrane Helix	271	289	0.90
Cytoplasmic	290	307	0.83
Transmembrane Helix	308	333	0.83
Non-Cytoplasmic	334	441	0.69