YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8177-PE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	692	0.98
Transmembrane Helix	693	715	0.90
Cytoplasmic	716	726	0.83
Transmembrane Helix	727	748	0.85
Non-Cytoplasmic	749	777	0.81
Transmembrane Helix	778	799	0.89
Cytoplasmic	800	808	0.76
Transmembrane Helix	809	829	0.85
Non-Cytoplasmic	830	892	0.90
Transmembrane Helix	893	914	0.92
Cytoplasmic	915	927	0.93
Transmembrane Helix	928	949	0.88
Non-Cytoplasmic	950	980	0.91
Transmembrane Helix	981	1000	0.96
Cytoplasmic	1001	1020	0.93
Transmembrane Helix	1021	1041	0.88
Non-Cytoplasmic	1042	1046	0.63
Transmembrane Helix	1047	1066	0.68
Cytoplasmic	1067	1080	0.78
Transmembrane Helix	1081	1100	0.86
Non-Cytoplasmic	1101	1105	0.60
Transmembrane Helix	1106	1127	0.86
Cytoplasmic	1128	1150	0.86
Transmembrane Helix	1151	1170	0.89
Non-Cytoplasmic	1171	1175	0.72
Transmembrane Helix	1176	1194	0.59
Cytoplasmic	1195	1228	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVFAGNSA RKDKFDVNTF QDNSQLPIGS RKKNSIRTND LNIEEDSEYE SQTEPLNNAQ  60
   61 NYDDIPEDFP LVSERAGHGD HSDNSVDEKH VQFGGKKKIP PSLSYDEQPT DQSHERKRRR 120
  121 SRHQYYRQRK FSHQDSVEPK NKLEENGDAG ARRISVQPED TALEEADLNE LRSHRSDDPR 180
  181 ALRRHKIHHS SIKLRELPQI TISPFTNKKP EVDHSPHEIF VQLDELTGVG EDREWKETAR 240
  241 WIKYEEDVEE GSDRWGKPHV ASLSFHSLLN LRRCLETGVV LLDLNEKDLP AVAYRVVEQM 300
  301 VIEDLIDIND KPSVMRSLLL RHRHVNEHQG VLPFTKRKYN SYTSLQFLWM GADSAHQPYQ 360
  361 QAQPPPRNLA KARRSICVTS SAPPTAAMLN VATATAAAAA IDHRRHSTMS YLGNLSGTDD 420
  421 KKIKIMPAAE IGGSKRSNEL KIDMKDDMYS SSQEDLKKLQ NDTILKRIPA GAEATTVLVG 480
  481 AVEFLEQPTI AFVRLSEGVL MPTLTEVPVP VRFMFVLLGP RNFDLDYHEV GRSISTLMAN 540
  541 EHFHSIAYKA DDRKDLLSAI NEFLDDSIVL PPGNWDRHDL LPFEELKAKK DWIRTRKIKA 600
  601 LQVKRDSEMI KIGKDEEKAL LEKQTLGAIG FTIGGGDGGG DGDSDDDNGR KKKKPSPLEK 660
  661 TGRLWGGLRN DLKRRMPMYK SDILDGLNTE TLAATIFMYF ACLSTAITFG GLVSAKTNSW 720
  721 IGISETLISC SLVGIVFHCL SCQPLVIIGT TGPLLLFDEA LMVFCTQHEF DFLSLRVYVG 780
  781 VWLIIIALTV SAFEGSVYVR LLTRFTQEIF SALITLIYIV ETFMKLISIY RENPLLSDYN 840
  841 LPPPTLVAHE HATNESLLNA TASVTTNITQ MVMNISTTAM PIGPPPLPKN QPNTALFCTI 900
  901 LTLATFVVAY YLKLFRNSHF LGRNARRALG DFGVPISIAI FVLVDYLVPA VYTEKLVVPE 960
  961 GLSPSDPSKR GWYIGFDTSS TWIPFACVIP ALLVYILIFM ESQISELIVD KPDRGLKKGS1020
 1021 GLHWDIVLLC LLNCACGIFG MPWHCAATVR SVTHVSSVTI MSRTHAPGES PRIVDVKEQR1080
 1081 LSGFFVCLMI GLSVLMAPLL RLIPMAVLFG VFLYMGVASM SGVQLFERIR LYFMPVKHYP1140
 1141 PTSYVKRLRP WKLHLFTTIQ VLCLVLLWSV KSSQFSLAFP FFLIMMVPIR QNLTKLYKPE1200
 1201 EMQALDGSEM KKNDDDEPDF YEQTNIPA