YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8177-PA, CG8177-PG
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	732	0.99
Transmembrane Helix	733	755	0.90
Cytoplasmic	756	766	0.83
Transmembrane Helix	767	788	0.85
Non-Cytoplasmic	789	817	0.81
Transmembrane Helix	818	839	0.89
Cytoplasmic	840	848	0.76
Transmembrane Helix	849	869	0.85
Non-Cytoplasmic	870	932	0.90
Transmembrane Helix	933	954	0.92
Cytoplasmic	955	967	0.93
Transmembrane Helix	968	989	0.88
Non-Cytoplasmic	990	1020	0.91
Transmembrane Helix	1021	1040	0.96
Cytoplasmic	1041	1060	0.93
Transmembrane Helix	1061	1081	0.88
Non-Cytoplasmic	1082	1086	0.63
Transmembrane Helix	1087	1106	0.68
Cytoplasmic	1107	1120	0.78
Transmembrane Helix	1121	1140	0.86
Non-Cytoplasmic	1141	1145	0.60
Transmembrane Helix	1146	1167	0.86
Cytoplasmic	1168	1190	0.86
Transmembrane Helix	1191	1210	0.89
Non-Cytoplasmic	1211	1215	0.72
Transmembrane Helix	1216	1234	0.59
Cytoplasmic	1235	1268	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSSASGRE NNVRKLSFLG FNTKKKSGNE DPDEVLLDSE MDKVFAGNSA RKDKFDVNTF  60
   61 QDNSQLPIGS RKKNSIRTND LNIEEDSEYE SQTEPLNNAQ NYDDIPEDFP LVSERAGHGD 120
  121 HSDNSVDEKH VQFGGKKKIP PSLSYDEQPT DQSHERKRRR SRHQYYRQRK FSHQDSVEPK 180
  181 NKLEENGDAG ARRISVQPED TALEEADLNE LRSHRSDDPR ALRRHKIHHS SIKLRELPQI 240
  241 TISPFTNKKP EVDHSPHEIF VQLDELTGVG EDREWKETAR WIKYEEDVEE GSDRWGKPHV 300
  301 ASLSFHSLLN LRRCLETGVV LLDLNEKDLP AVAYRVVEQM VIEDLIDIND KPSVMRSLLL 360
  361 RHRHVNEHQG VLPFTKRKYN SYTSLQFLWM GADSAHQPYQ QAQPPPRNLA KARRSICVTS 420
  421 SAPPTAAMLN VATATAAAAA IDHRRHSTMS YLGNLSGTDD KKIKIMPAAE IGGSKRSNEL 480
  481 KIDMKDDMYS SSQEDLKKLQ NDTILKRIPA GAEATTVLVG AVEFLEQPTI AFVRLSEGVL 540
  541 MPTLTEVPVP VRFMFVLLGP RNFDLDYHEV GRSISTLMAN EHFHSIAYKA DDRKDLLSAI 600
  601 NEFLDDSIVL PPGNWDRHDL LPFEELKAKK DWIRTRKIKA LQVKRDSEMI KIGKDEEKAL 660
  661 LEKQTLGAIG FTIGGGDGGG DGDSDDDNGR KKKKPSPLEK TGRLWGGLRN DLKRRMPMYK 720
  721 SDILDGLNTE TLAATIFMYF ACLSTAITFG GLVSAKTNSW IGISETLISC SLVGIVFHCL 780
  781 SCQPLVIIGT TGPLLLFDEA LMVFCTQHEF DFLSLRVYVG VWLIIIALTV SAFEGSVYVR 840
  841 LLTRFTQEIF SALITLIYIV ETFMKLISIY RENPLLSDYN LPPPTLVAHE HATNESLLNA 900
  901 TASVTTNITQ MVMNISTTAM PIGPPPLPKN QPNTALFCTI LTLATFVVAY YLKLFRNSHF 960
  961 LGRNARRALG DFGVPISIAI FVLVDYLVPA VYTEKLVVPE GLSPSDPSKR GWYIGFDTSS1020
 1021 TWIPFACVIP ALLVYILIFM ESQISELIVD KPDRGLKKGS GLHWDIVLLC LLNCACGIFG1080
 1081 MPWHCAATVR SVTHVSSVTI MSRTHAPGES PRIVDVKEQR LSGFFVCLMI GLSVLMAPLL1140
 1141 RLIPMAVLFG VFLYMGVASM SGVQLFERIR LYFMPVKHYP PTSYVKRLRP WKLHLFTTIQ1200
 1201 VLCLVLLWSV KSSQFSLAFP FFLIMMVPIR QNLTKLYKPE EMQALDGSEM KKNDDDEPDF1260
 1261 YEQTNIPA