YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7294969, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGATNADIK RVLSIQSHVV HGYVGNKVAT YPLQLLGFDV DPLNSVQFSN HTGYKTFKGP  60
   61 VSNEKELATI FEGLEENELL PLYSHLLTGY IGNPLFLRQV GHILKKLRQA NPGLVYVCDP 120
  121 VMGDNGQLYV PKELLPVYRD EIIPLADIIT PNQFEVELLT EKEVRSEAAV WEAMEWFHQR 180
  181 GIKTVVISSS DLGQPGVLRA FLSQQNGPRL AIDIPKQGGK DLVFTGTGDL FASLFLAHSH 240
  241 GSKDIANVFE KTIASLQAVI KRTVASLPNG GNGPVKAAER ELKLVQSKTE IEQPQQDPHD 300
  301 SLFALGASNK WLYKIAAGQS GKNKPVDMWL SLIFIACLAG ASSGDEKIPV EQGFVPRYTP 360
  361 VAESKRQDLD LPADVGIEQQ KRPAAGDKKP WRRVQYGYDG VPTAAWAAPS PPAAILSILN 420
  421 PLLAPGLLLL GVNLGALLYM LLGLLGLAPY RSGSASRLAS HPETNSQFWP CDQSFYHRDD 480
  481 RHNLDEGKET AVYF

Type	Start	End	Confidence
Non-Cytoplasmic	1	425	0.67
Transmembrane Helix	426	448	0.89
Cytoplasmic	449	494	0.90