YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rh50-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.80
Transmembrane Helix	8	29	0.93
Non-Cytoplasmic	30	57	0.80
Transmembrane Helix	58	76	0.72
Cytoplasmic	77	82	0.56
Transmembrane Helix	83	105	0.83
Non-Cytoplasmic	106	118	0.72
Transmembrane Helix	119	143	0.62
Cytoplasmic	144	144	0.48
Transmembrane Helix	145	169	0.60
Non-Cytoplasmic	170	171	0.44
Transmembrane Helix	172	193	0.78
Cytoplasmic	194	206	0.48
Transmembrane Helix	207	228	0.83
Non-Cytoplasmic	229	242	0.52
Transmembrane Helix	243	266	0.87
Cytoplasmic	267	273	0.50
Transmembrane Helix	274	295	0.56
Non-Cytoplasmic	296	296	0.39
Transmembrane Helix	297	319	0.85
Cytoplasmic	320	333	0.90
Transmembrane Helix	334	356	0.85
Non-Cytoplasmic	357	397	0.91
Transmembrane Helix	398	419	0.93
Cytoplasmic	420	449	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSPAAKVSG YVVLMIVQII FLVLFWLFVR YEKTALPLAI DAEDAGSANE HVSKYPQFQD  60
   61 IQVMIFIGFG FLMTFLRKYG YSATGFTLFM AALVVQWAVL MKGFLHMEGG KISLSLENII 120
  121 DADIAAAVPL ISMGALLGRT TPIQLLCMSV FEVALFAANE YLALHVFSIC DCGGSITVHA 180
  181 FGAYFGLAVA LMLRPASDQN ETGKLEGASY TSDIFAMIGT TFLWVYWPSF NSVLADGAGG 240
  241 ERAILNTFLS LAAATVTTFV VSALVSHENK LDMVHVQNST LAGGVAVGTV CNLLLGAHGA 300
  301 VLIGIIAGTV SVLGYRYLTP WMTANLRLHD TCGVHNLHGM PALISAIASA IYASMATVGE 360
  361 YQSELQDIFP AMVGTNGTET KIMGGLGRNA TSQAGYQLFG IAVTLLIAIG GGILTGAVLK 420
  421 YTNFRNLKKD EHHQDEHYWE VPAAENKEE