YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr64a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGPNLNFRK TPSKDNGVKQ VESLARPETP PPKFVEDSNL EFNVLASEKL PNYTNLDLFH  60
   61 RAVFPFMFLA QCVAIMPLVG IRESNPRRVR FAYKSIPMFV TLIFMIATSI LFLSMFTHLL 120
  121 KIGITAKNFV GLVFFGCVLS AYVVFIRLAK KWPAVVRIWT RTEIPFTKPP YEIPKRNLSR 180
  181 RVQLAALAII GLSLGEHALY QVSAILSYTR RIQMCANITT VPSFNNYMQT NYDYVFQLLP 240
  241 YSPIIAVLIL LINGACTFVW NYMDLFIMMI SKGLSYRFEQ ITTRIRKLEH EEVCESVFIQ 300
  301 IREHYVKMCE LLEFVDSAMS SLILLSCVNN LYFVCYQLLN VFNKLRWPIN YIYFWYSLLY 360
  361 LIGRTAFVFL TAADINEESK RGLGVLRRVS SRSWCVEVER LIFQMTTQTV ALSGKKFYFL 420
  421 TRRLLFGMAG TIVTYELVLL QFDEPNRRKG LQPLCA

Type	Start	End	Confidence
Non-Cytoplasmic	1	61	0.90
Transmembrane Helix	62	81	0.88
Cytoplasmic	82	95	0.89
Transmembrane Helix	96	119	0.86
Non-Cytoplasmic	120	128	0.71
Transmembrane Helix	129	149	0.92
Cytoplasmic	150	181	0.96
Transmembrane Helix	182	200	0.91
Non-Cytoplasmic	201	240	0.91
Transmembrane Helix	241	262	0.92
Cytoplasmic	263	316	0.93
Transmembrane Helix	317	336	0.70
Non-Cytoplasmic	337	351	0.67
Transmembrane Helix	352	373	0.88
Cytoplasmic	374	423	0.77
Transmembrane Helix	424	439	0.64
Non-Cytoplasmic	440	456	0.56