YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220954776, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLELNILT LNIWGIPYVS SDRRPRIDAI CKELASGKYD IVSLQEVWAQ EDSELLQKGT  60
   61 EAVLPHSHYF HSGVMGAGLL VLSKYPILGT LFHAWSVNGY FHRIQHADWF GGKGVGLCRI 120
  121 LVGGQMVHLY NAHLHAEYDN ANDEYKTHRV IQAFDTAQFI EATRGNSALQ ILAGDLNAQP 180
  181 QDISYKVLLY TSKMLDSCDS DSFRTNECEH NSYTSKQARE RNPLGIRIDH IFVRGGDHVN 240
  241 AEIAEYKLPF PERVPGEKFS FSDHEAVMAK LKLFKLEPRS EEPVATIEVN CLVEDGETCS 300
  301 VREVGAGDAL TGEDDQSSQH QPEIQCNGSS TSIQSMPAAR TAALLEALAL CDASLLQLNT 360
  361 DRILYYSAAT FLFVLLVLLV EFTAPVGMRT IFLLLKFIVF GVILFCVFMA SIWNYMERNG 420
  421 VLQGKKSMEV MLHHAQKYEY FY

Type	Start	End	Confidence
Non-Cytoplasmic	1	362	0.61
Transmembrane Helix	363	384	0.92
Cytoplasmic	385	391	0.47
Transmembrane Helix	392	413	0.94
Non-Cytoplasmic	414	442	0.52