YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG13801-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.77
Transmembrane Helix	21	45	0.81
Non-Cytoplasmic	46	200	0.63
Transmembrane Helix	201	220	0.94
Cytoplasmic	221	226	0.50
Transmembrane Helix	227	250	0.82
Non-Cytoplasmic	251	295	0.59
Transmembrane Helix	296	324	0.78
Cytoplasmic	325	337	0.71
Transmembrane Helix	338	358	0.83
Non-Cytoplasmic	359	381	0.90
Transmembrane Helix	382	403	0.92
Cytoplasmic	404	471	0.97
Transmembrane Helix	472	492	0.90
Non-Cytoplasmic	493	496	0.69
Transmembrane Helix	497	517	0.89
Cytoplasmic	518	526	0.83
Transmembrane Helix	527	547	0.85
Non-Cytoplasmic	548	573	0.60
Transmembrane Helix	574	596	0.84
Cytoplasmic	597	660	0.45
Transmembrane Helix	661	684	0.92
Non-Cytoplasmic	685	690	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPIIKKYRL RLRRTERDST IGYVFRIIRI VILLSLWTGS TIILFLHKPE ELATSMVTVM  60
   61 PNKTAFRNVK MKQDSVEIRL NGAINAYLTN HRVRTSNFSA VGVRLEWRDR GMNRSLWRTG 120
  121 MWMVYMYKDK KKYLQVNRVF QFSISGWQQE RSLIQRTLPT DRSLENSVYD WAFAQTVISF 180
  181 ESMSKDPVGL LMTVNSTPLE HGLGILYAAL LLIGLYAIII WEFSDRILST LLITAMSLAL 240
  241 LTVLGSRPTL ETIVSWVDWE TMMLLLGNMI ITSRMADTGF FDYLAVVAYR ISKGHAWLLI 300
  301 GLLGFFVGLT STVVDNATVV LLFCPPVIRL CEVMDLRTTL VLIIVAIYAN IGGSITPVSG 360
  361 PPNTIIATNK MVESAGINFV RFSLLMLPTA LICLASTFGL IYWTMGKKIY ILDEDQVNLA 420
  421 EKRRENTRTS FDIQLRVAEL RRQPRSKVIP PAESYFITLA TLEASNFVRK KVLLVESLLA 480
  481 LSFAAFCFIL QSVPWAIPGA SLGWISILSA FLLLILIDQK DIIKVMASVE WGIMLLLASL 540
  541 FIFTMVVDEL GLIHWLGSQV VSVILRVDES YQTMVGMLLI LWLSALLSAF IHNAAVAPIM 600
  601 VKLCTDMVVY DQVQMPLLPL IWATSMGTSY GANGTLLGSL ANEFAAVVGK AHGYKITFRS 660
  661 FFVVGFLIML FTVVICSIFL IIAHSIFDWH