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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|23095186, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNDNPYYQE DVVAYRSLST VKDLEWRHLK NKCQNLRLEL ACSRLRELAL MSNVVQIIWH  60
   61 VELLMVAHVI LLLALVKWLV HHSPTTSNYF FLADLVSDLL GTIYSGAAYP TVPCYDHVVL 120
  121 VSVYMTLPIA FYQGSSVYVL GMVVSIIYIG YAFYMQYLND QVSFYLLASY AIYLFTLNLI 180
  181 FSFFTIIRDY GLRRAILSRY QLVYQNIVYQ LVMKKENGLL ESILPRKMIR TLQEEICSRI 240
  241 EDQDKNFTPS KAGLRKLFLE PYPNVSILVA DMVNYTHLTT TLEAPQLVEI LHDLFVNFDL 300
  301 AANRNRAMRI KFLGDSYNCV AGIPNYFPAH ASCCVDQALE MIHITQGVSS RRELDINLRI 360
  361 GVHSGEVFAG IIGHTKWQFD IWSKDVDITN RLESSGLPGL VHVSQRTLSM LDEHYIFREG 420
  421 TEAAKNDPIL QQAGIRTFLV SNRLPDAVEP GELDDELSSA SINSCRLSYG GYYEEIQIKA 480
  481 QREIMKEVDQ MAVGHCFIEW RRSSSMKKQD FNEEYLFSNQ IHLVLGVFRS WKREWEFHNL 540
  541 PDLMIKYTML LVLCAGLAIM SINLIEEATY PDILVLLGIL LILLILCILA GYKKLRLQWK 600
  601 KLTPMSQPSC FLSRWLLRIS ERIEDSLFVR IPLTMVVLLL LYVMSSQAVT VTYCVVIVIS 660
  661 LLFVVPGCPL VIKILAGLLI LGLHLGTVHL YYGFAFERSE TTDLGLKSDY AHTWYLVALF 720
  721 IVLVLRERHV NYLRKFNYFM RVCYEEAHQQ TDEKLRSIKI IMANILPTHV AQVYKVRRPH 780
  781 DQLYYENFSK VAVMFASIEN FNADTAGLRI LHEIICCFDD LLVDYQTRYK IEKIKVMGWT 840
  841 YMVACGLETD HYTDFSIDIP VKQPEADSEI RRGSSVLTVH FGSTEDDEMS GDNVSQPYAQ 900
  901 VQDVAVLVMT EFALDLLRIM HDIRYNYVFS EYDTFLTGSL KIGISHGSVM AGVVGLSKPH 960
  961 YDIWGHTVNM ASRMSSTGLL DNIQVTRHTA KVLRQFNIRC NYRGHTEVKG VGKVPTYLVV1020
 1021 VDPDLTFQDH DQVSMSMKDS KSWVIDTLSL SFTPSFVPPK SSTSDEEEAE GELEENVSEG1080
 1081 DELEVSIHER QKGGIFLAGN LH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle