YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SerT-PA, FBpp0309974
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.98
Transmembrane Helix	81	102	0.87
Non-Cytoplasmic	103	110	0.81
Transmembrane Helix	111	130	0.93
Cytoplasmic	131	154	0.81
Transmembrane Helix	155	175	0.84
Non-Cytoplasmic	176	242	0.94
Transmembrane Helix	243	263	0.93
Cytoplasmic	264	271	0.88
Transmembrane Helix	272	294	0.89
Non-Cytoplasmic	295	321	0.92
Transmembrane Helix	322	342	0.88
Cytoplasmic	343	357	0.77
Transmembrane Helix	358	380	0.86
Non-Cytoplasmic	381	403	0.92
Transmembrane Helix	404	427	0.78
Cytoplasmic	428	454	0.87
Transmembrane Helix	455	478	0.90
Non-Cytoplasmic	479	486	0.83
Transmembrane Helix	487	509	0.92
Cytoplasmic	510	529	0.89
Transmembrane Helix	530	549	0.96
Non-Cytoplasmic	550	567	0.91
Transmembrane Helix	568	590	0.94
Cytoplasmic	591	622	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSGSSDFA GAAATTGRSN PAPWSDDKES PNNEDDSNED DGDHTTPAKV TDPLAPKLAN  60
   61 NERILVVSVT ERTRETWGQK AEFLLAVIGF AVDLGNVWRF PYICYQNGGG AFLVPYCLFL 120
  121 IFGGLPLFYM ELALGQFHRC GCLSIWKRIC PALKGVGYAI CLIDIYMGMY YNTIIGWAVY 180
  181 YLFASFTSKL PWTSCDNPWN TENCMQVTSE NFTELATSPA KEFFERKVLE SYKGNGLDFM 240
  241 GPVKPTLALC VFGVFVLVYF SLWKGVRSAG KVVWVTALAP YVVLIILLVR GVSLPGADEG 300
  301 IKYYLTPEWH KLKNSKVWID AASQIFFSLG PGFGTLLALS SYNKFNNNCY RDALITSSIN 360
  361 CLTSFLAGFV IFSVLGYMAY VQKTSIDKVG LEGPGLVFIV YPEAIATMSG SVFWSIIFFL 420
  421 MLITLGLDST FGGLEAMITA LCDEYPRVIG RRRELFVLLL LAFIFLCALP TMTYGGVVLV 480
  481 NFLNVYGPGL AILFVVFVEA AGVFWFYGVD RFSSDVEQML GSKPGLFWRI CWTYISPVFL 540
  541 LTIFIFSIMG YKEMLGEEYY YPDWSYQVGW AVTCSSVLCI PMYIIYKFFF ASKGGCRQRL 600
  601 QESFQPEDNC GSVVPGQQGT SV