YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG30181-PA
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNERVLLWI RGAAARILRG LLALLWLILA GCGRLFGRLR DVVAQAGAET GLLALSLCVN  60
   61 RSIHLLERLF WLAVVVSSVI AALVLSRLQL ERYFSSPTVI SVDRDYRGWN GSLPAVTLCY 120
  121 YDHIDSFKAN EYIQEMWNVS IIDEDYFYFM DFLYAVVNAT AGNYAELAKF AEDERFDQID 180
  181 LYEMIQRVDR PFEQVISSFD AGFQVHVQRV MTERGACYAI NSPMSTVLSG QPVAYELMPQ 240
  241 PLSCQYGKQQ CYIRMDLYES TGVLDVHSPF EVSATEANIV ALHKSDEITA SFKVLETVAS 300
  301 KNLRQLSVAQ RKCVFNNEET SNLKIYSKSL CLARCRAVMA LEMCNCVPFF YPYVDGPSCN 360
  361 PAGFECLLDF KWPIWALHIC KCPSTCTEIE YTMQTVKKSS WGVKNNEEVA SSETATSSFR 420
  421 WDLIPPKVRM RRDVVYSFED LVVSFGGVLA LFVGVSVMGL VEMVHVLVNN LLLDVFTLLR 480
  481 LMLGRLRRCW RRDDHMREAN HHHHANAHAH ARLHDFNERL SLAATAELPP FDYVN

Type	Start	End	Confidence
Cytoplasmic	1	16	0.81
Transmembrane Helix	17	37	0.88
Non-Cytoplasmic	38	68	0.70
Transmembrane Helix	69	88	0.91
Cytoplasmic	89	435	0.86
Transmembrane Helix	436	457	0.84
Non-Cytoplasmic	458	462	0.69
Transmembrane Helix	463	483	0.83
Cytoplasmic	484	535	0.94