YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3649-PA
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.64
Transmembrane Helix	9	33	0.73
Non-Cytoplasmic	34	54	0.65
Transmembrane Helix	55	74	0.63
Cytoplasmic	75	81	0.80
Transmembrane Helix	82	103	0.93
Non-Cytoplasmic	104	110	0.78
Transmembrane Helix	111	133	0.88
Cytoplasmic	134	145	0.89
Transmembrane Helix	146	168	0.87
Non-Cytoplasmic	169	175	0.76
Transmembrane Helix	176	196	0.88
Cytoplasmic	197	240	0.90
Transmembrane Helix	241	259	0.74
Non-Cytoplasmic	260	273	0.70
Transmembrane Helix	274	299	0.83
Cytoplasmic	300	315	0.76
Transmembrane Helix	316	335	0.75
Non-Cytoplasmic	336	374	0.53
Transmembrane Helix	375	399	0.86
Cytoplasmic	400	409	0.67
Transmembrane Helix	410	430	0.94
Non-Cytoplasmic	431	473	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGVRHLQVL FLFLCATLIV AQRFNMSVAI VAFTNANSSN PNYPEYRLTE PQKSYTISSP  60
   61 FWGSCCTQMM SGYLSSRFGA KVLLLTIMLL TALLSIATPF ALAWGGWQLL FWVRFVQGLA 120
  121 MGGMWPCLYT HLAKWCPKKE ANRMGGIMTT GLDCGTIMGF ALSGVLSASP LGWPSTFYVP 180
  181 GYLGIVWCLT FLRYGANSPS ESKFISLAER KHIQFALEQN QVIRGATPPV PWLQILTSRP 240
  241 FIVLAFCKMS QACSFYTLMQ QIPRYIHGIF HYSIAANALL SALPFVVMLM SSYGFIFLAE 300
  301 YLTRRRDISL PILRKTINSF ATWTPAVALV ILSYVSDQNV VGSMFCLIAA TAAISGQAIG 360
  361 SSLNHVDLSP NFAGLLFGMS NTLMSAAGVI SPIVIGLTVT KESDRSQWRT VFLGISVILF 420
  421 LGNLMYLIFG QMTVQSWNDS PSKETETEAS PKPQASAPSV AEETISVERF NYL