YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Oatp58Dc-PB, Oat...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	111	0.67
Transmembrane Helix	112	131	0.90
Non-Cytoplasmic	132	149	0.57
Transmembrane Helix	150	171	0.57
Cytoplasmic	172	178	0.92
Transmembrane Helix	179	201	0.92
Non-Cytoplasmic	202	256	0.98
Transmembrane Helix	257	277	0.94
Cytoplasmic	278	296	0.92
Transmembrane Helix	297	320	0.92
Non-Cytoplasmic	321	337	0.94
Transmembrane Helix	338	359	0.94
Cytoplasmic	360	423	0.97
Transmembrane Helix	424	445	0.90
Non-Cytoplasmic	446	462	0.90
Transmembrane Helix	463	484	0.93
Cytoplasmic	485	493	0.88
Transmembrane Helix	494	515	0.94
Non-Cytoplasmic	516	640	0.98
Transmembrane Helix	641	660	0.92
Cytoplasmic	661	680	0.90
Transmembrane Helix	681	703	0.92
Non-Cytoplasmic	704	733	0.95
Transmembrane Helix	734	755	0.92
Cytoplasmic	756	789	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQSENPSSL GAELQDLEHG RRESRDESDV ESRLLNNGKS YDKEKEAGNQ DGEETTPKTG  60
   61 KSKKKKQKSE QDRLMTAEIN KLLAESPLEK NVTCGFWIFK GTFYQRFANQ TAYVLLYGIV 120
  121 GCIFSMTYAY FNGTITTIEK RFKIPSKNTG IISVGNDISQ TLVSAVLAYY AGKGHRPRWI 180
  181 GFGLLTIVFF CILTTAPHFL YGPGEDALAL TSEFGGMPDE NATMEAIEEQ RSKTLCRLNG 240
  241 GGAECEVGEG NFAPQLLLFV AQFISGIGGS LYYTLGVSYM DDNTKKSKTP ALLSLSYFLR 300
  301 MLGPAIGYAL ASFCLRLYIA PQMHPVINNK DPRWLGAWWL GWLVMGGLLS FSGVFLSMFP 360
  361 KELPRAVARR KVEENRRREK ERLSVKSTEK ERLTAELDQK TTAEAKASFQ DMLKTFRRLI 420
  421 TNKTYMCNTL SSIFYLVGYT PYWIFTPKYI EVQYRQSAAT SSMVTGTVAL AFSAVGVLLS 480
  481 GFIISRYKPR ARYMAAWNVI VGFLTVAGIL AYAFIGCPGN ESSVIVNIHD SSLAGNTTTC 540
  541 NSACSCDYVR YSPVCGENNM TYISACHAGC KKLLVNSEGK KIFYDCSCIP SDDAGNSTSQ 600
  601 FKRLTSFDLS NDEVSQNTSV HSQLEALANG QAMPGACPVN CWTQFVAFLA VMCCLKFVGA 660
  661 SGRASNFLVS VRCVPEKDKT AAMGFGMTLC SMLAFIPSPI FFGWVFDRVC LVWGKTCTNK 720
  721 GNCWLYDPLS MRYTLNFTAA VFIAIGAIFD LGVWYYAKDL KIFDEDVKEV EMKIVQHEEE 780
  781 ANNEKNTEI