YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG10069-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.97
Transmembrane Helix	82	102	0.86
Non-Cytoplasmic	103	140	0.93
Transmembrane Helix	141	162	0.90
Cytoplasmic	163	170	0.76
Transmembrane Helix	171	190	0.94
Non-Cytoplasmic	191	200	0.76
Transmembrane Helix	201	224	0.86
Cytoplasmic	225	234	0.84
Transmembrane Helix	235	256	0.92
Non-Cytoplasmic	257	262	0.81
Transmembrane Helix	263	285	0.92
Cytoplasmic	286	356	0.98
Transmembrane Helix	357	378	0.91
Non-Cytoplasmic	379	403	0.83
Transmembrane Helix	404	422	0.84
Cytoplasmic	423	427	0.68
Transmembrane Helix	428	447	0.88
Non-Cytoplasmic	448	454	0.62
Transmembrane Helix	455	476	0.91
Cytoplasmic	477	496	0.77
Transmembrane Helix	497	519	0.83
Non-Cytoplasmic	520	528	0.77
Transmembrane Helix	529	550	0.93
Cytoplasmic	551	566	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTSEQKSSW HYSQPKRIRE PSHLDEQHLH LAHCPRRSMR ASLGLGRTRK MSNNYNDVPF  60
   61 GIRAVQRLSR QCCTRFHARR DLLYKMSVFV LTFLAYACYH MCRKPISVVK SVLQGNCSTA 120
  121 LAASGQDCGY APFDVPDATT LFGMLDSAFL FSYAIAMFAS GFVAERVSLR YFLSMGMILT 180
  181 GVFTYMFGIA RTSNIHSLWY FIIVQIFAGI FQTTGWPGVV ALVGRWFGKS KRGLIFGIWN 240
  241 SHTSIGNILG TLIAAHYVES DWALSFVVPG IIIAAVGFLL FLFLVDQPEI VGCYPQAGQH 300
  301 ERRVANESDV EQDDEEQVRH NDAEINYRSA PTERTPILPR SQPEAVPRGR GRPISLIDAL 360
  361 FIPGVVEFSL CLFFTKLVSY TFMYWLPLYI QKSSTLGPEL SADLSTLFDV GGILGAIAAG 420
  421 YLSDVSGMSA TVCTGMLFVA SPILLMYQQY GALSMTISIV LLIVVGIFVN GPYALITTSV 480
  481 SAELGQHSSL EGNANALATV TAIIDGTGSI GAAVGPLLAG LISTAGWQYV FHMLIAADII 540
  541 AMVLLGRLVF KEFAALRRAS HRIRIE