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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Vha100-3-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVFKKRQTK VKSFFRSEDM DLCQLLLHTE NAFDCLIEVG HHGAVQFNNV YDEDRLLNNL  60
   61 YSKKVTQCYE LLRIVDSLHT YIVQLHVNEI FYPDVDRENR LKEKDLAKYS DSLKRIHVEA 120
  121 SAVTEHYYRL DSRRNRMMEH SFALNKANKY MVSDMGSELL YSESTVIGLV QDATTTSGAY 180
  181 PAHLNYMIGC IRADKFYSFE LLLYRLCSFN LIIRFSEMPS PVYEYHYGYK PERVRKFAIL 240
  241 MMASSTMIWP KVLKICAHYH VNIYDCPSSA SQREDKVKEL SQEIVNVEKV LKEAELMRRQ 300
  301 ILEVAGRDLF IIRVNLRKAL KVYDLMNRLR LVGGVEVPRY LLAEVYIPSS DVPEVEVILR 360
  361 NASRISGGAD NIDSSDEDEM NDMKTMPNTT PYPIEADFQP LEDMSAGAIL LKKNRLVNHM 420
  421 PPTYFRLNKF TRGFQNLIDA YGMADYKELN PAPYTIITFP FLFAVMFGDL GHGILLILFS 480
  481 SLMIWKHREI EKYQINATSE NEILNILYAG RYIILLMGVF SVYMGLVYNI VMAKGFNLFG 540
  541 SSWSCRYNET TVYDPAFHVT LDSSHPHFYS GHPYPLGMDP VWAVCGQDSI TTTNSLKMKM 600
  601 AIVLGISQMM FGLGLAAANC VLMNRKADLI LVVIPQMIFM LCLFGYLVFL IFYKWMSYGG 660
  661 HKPAPYNAAC APSVLITFIN MMLMKKEDPV ENCLDYMYPN ERMIEFALVG IAFCTIPILL 720
  721 AGKPIYLMRR RRKMQQERER DFKRMRRQTI AEMRSTMRYT DDDNSETSRQ KSVDNEEEHE 780
  781 MSEIWIHSGI HTIETVLGSV SHTASYLRLW ALSLAHDQLS DVLWHMVLTK GFANTLPLYY 840
  841 GVPVLMATFF AWAILTVAIL VMMEGLSAFL HTLRLHWVEF QSKFFGGAGE SFKAFNFPTS 900
  901 NQRS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle