YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220952136
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.86
Transmembrane Helix	40	64	0.73
Non-Cytoplasmic	65	84	0.72
Transmembrane Helix	85	103	0.70
Cytoplasmic	104	112	0.63
Transmembrane Helix	113	133	0.88
Non-Cytoplasmic	134	140	0.54
Transmembrane Helix	141	163	0.62
Cytoplasmic	164	178	0.74
Transmembrane Helix	179	199	0.84
Non-Cytoplasmic	200	206	0.71
Transmembrane Helix	207	226	0.95
Cytoplasmic	227	266	0.93
Transmembrane Helix	267	286	0.91
Non-Cytoplasmic	287	312	0.90
Transmembrane Helix	313	335	0.84
Cytoplasmic	336	350	0.85
Transmembrane Helix	351	370	0.95
Non-Cytoplasmic	371	376	0.87
Transmembrane Helix	377	396	0.91
Cytoplasmic	397	406	0.78
Transmembrane Helix	407	433	0.83
Non-Cytoplasmic	434	444	0.76
Transmembrane Helix	445	464	0.95
Cytoplasmic	465	491	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLMCCGGSN GTMDMEAKNS NKEDEAVGKH SGLGVRHFQV LLLFFALTVA YGCRVNLSVA  60
   61 VVAMTDAASV NPDFPEYNWS EKTKSLLLSS FFWGYVITQV PAGQLARKYG GKVMILSGLA 120
  121 ICSILNILTP ICAKIGGWQL VCALRVVEGL CQGVVFPSTH TILSQWAPPK ERATLGTCAY 180
  181 SGNQFGTILM LATSGVIAAS PIGWPSIFYI SGGIGCVWSV VYFFFGAGSP QECKSISAEE 240
  241 KKLIEMSQAD EVSGGQEQPK EQLPTPWLSF FTSPAFLVLI VSHSVHNWGF WTLLTEIPSY 300
  301 MKNILGKDIK SNALLSSLPY VCMFAMSFVF SSISAQLNNR NCISRSTSRK LFNSIGLWIP 360
  361 MVTLVGLGYV NPDQSELAVV LLCFTVGMNG ATYLGFNTNH IDLSPNFAGI LMGITNGVAN 420
  421 IMSIIAPLIV GFIVTNEHDP EQWRIVFFIA AGFYLVGNTL YVIFGKANVQ PWNDPPAKPR 480
  481 RNSTPQVESQ H