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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7302641, gi|2...
Protein type: Globular with Signal Peptide
Type Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKLAKVAL NSSNVATESN IKNNKLLANL SAAGAATATT ATTGTATTTT ATTANQALNF  60
   61 NNKTKATANA TAASANNRHN NNNNSSAIKK HTNTKQLAGK SPACNSSSSS LSSSSSSNSS 120
  121 ESKDTNFEYE DEWNIGGIPE LLDDLDADIE KSAHSSGGGN QATALNAKQA NSSSTSSSSS 180
  181 SKGGASSSSS SAAATGSSSS HKSHKTTLHS NLSATSPTTI KFTRQPVAIG GANSSSSSSA 240
  241 AAAPSGGSAN VVAKGSSSSS SSTSSSSSGK HHHHHHHHSN SSSSGSSSKG YKSALVAQLN 300
  301 SPSPLNSNSK SLSGSGSGSG NTNGAAGAGA GSTLSSSTFA GFSKGGSLVS SSAGAAAALA 360
  361 AGSGQQGSKF SAGGMSSQTG SGSGGNNTSN SNNSSSGSGG SGSGSSTGNT ASGSGNNNST 420
  421 SAGGPPSSQG GNNGNGSGSS SSSSSGKSSA KMSIDHQATL DKGLKMKIKR TKPGTKSSEA 480
  481 KHEIVKATDQ QQNGALGAGS NNSANEDGSS GSSSTNASSL GSTNSSSSAS SGSSSSSGSS 540
  541 SSSSKKHLNN ASSGSGSSSS GGGSQNNASG HASGGGSSGS SQSTPQGTKR GSSGHRREKT 600
  601 KDKNAHSNRM SVDKSAAAAS AAGEKDTPEK CSGTGAGGSP CSCNGDVGAP CSHHACIRRA 660
  661 AHMSNSAGNA NSSAGTGQSG GSSSMSAVPP GVFTPSAGSP STGSPSTVVP AAASLLAATG 720
  721 AASSSASQMA SSSAGGVGGS GGGANAPGPP GKESAGSIKI SSHIAAQLAA AAASNSYSGS 780
  781 GANTNQGQNS NAGGNGGSES KAAAAAQAKL MAPGMISATM HHTISVPAGT GTGDDDTKSP 840
  841 PAKRVKHEAG ASGAGGGKEM VDICIGTSVG TITEPDCLGP CEPGTSVTLE GIVWHETEGG 900
  901 VLVVNVTWRG KTYVGTLLDC TRHDWAPPRF CDSPTEELDS RTPKGRGKRG RSAGLTPDLS 960
  961 NFTETRSSIY FSHAQVHSKL RNGATKGRGG ATPSTSPTAF LPPRPEKRKS KDEAPSPLNG1020
 1021 DASDGASVGG IGGAGGVNMV NASGIPISAS GGGLATQPQS LLNPVTGLNV QISTKKCKTA1080
 1081 SPCAISPVLL ECPEQDCSKK YKHANGLRYH QSHAHGAGGG ASSMDEDSMQ APEDPATPPS1140
 1141 PGVASGTGSG ASVASSAVPA TAPSAGQGTV AVSPNTPLAN SSNPVTNGNV APSAPATGSV1200
 1201 TIAAPNTTPS VVETQAPLTG PPPVTPPAPT PICAVATPGA EQSVSSVLPL GNLPLTAGPN1260
 1261 SATQQQQPPT QQQQPQLLVP GGSAASLQQQ QQQQQPVAGG SITAGISGQA LSQHQQQLMG1320
 1321 GLPAMLSDQQ QQALLQQGAL KAGVLRFGPP DGNPLQQQPG QASVNPQTQQ SPPRPPSHVQ1380
 1381 DQQTPSAYAQ QAGLKTSPGF GSVGVGAASS KQKKNRKSPG PSDFEGRVSR EDVQSPAYSD1440
 1441 ISDDSTPVAE QEMLDKSVGQ AVTAKHIELM GKKPTEVGVG VPPPPAPNMY VPGMYQFYPA1500
 1501 QQQSAPPPQQ QQQQPQYMVQ TEPGKPPGLP PALTQAQQQQ QLQPGAPPPT SQPPSHLLGP1560
 1561 PGQQSVAAHL ADYSGKNKDP PLDLMTKPQP QPGQPPSQQQ QSGQLSGQEN NGKDVGPPTS1620
 1621 QPGSQPPPVN LSAVAGPPPG SLPPGLGGLS ALGAAGLGGP GPGKGMPHFY PFNFIPPAYP1680
 1681 YNVDPNFGSV SIVASEEAAK LSGHPGLPPS SQAQQLSGIS IKEERLKESP SPHDQPKHMP1740
 1741 SQQQMIASKL IKQEPMTKQE IKQEPNSNPG QQHPPPQQQP APQPQQQQPP PPQPQQPHAL1800
 1801 HPKDLQALGA YPAIYQRHSI NLAVQQAREE ELRRYYMFTG RQNSAAAAAA AAAQNAASGG1860
 1861 LPPHPGMMHK DEPGMGSAAQ QQQQQQQQQM QIAQQQQQAI QQHHQHLQQQ HQAQQQQQQQ1920
 1921 QHQQQQQQQQ QQQQQQQQQQ QQQKLKQSQA ASAGANNKAT NLTKDSPKQK GGDDDQPLKV1980
 1981 KQEGQKPTME TQGPPPPPTS QYFLHPSYIS PTPFGFDPNH PMYRNVLMSA AGPYNTAPYH2040
 2041 LPIPRPYHAP EDLSRNTGTK ALDALHHAAS QYYTTHKIHE LSERALKSPT SGSGPVKVSV2100
 2101 SSPSIGPPQP GGPTSSGPGS GPVSGVLGPG SGSNQQPGSA PGSAGGVPLN LQPPPGGMGP2160
 2161 SPGSKPDLSG PKGHGGVTPG SSLDGHKQSM PGGPPPNGPS GNGAVGGVGG AAGNGAAGGG2220
 2221 GAGAADSRSP PPQRHVHTHH HTHVGLGYPM YPAPYGAAVL ASQQAAAVAV INPFPPGPSK2280
 2281 

YRC Informatics Platform - Version 3.0
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