YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6484-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	30	0.94
Non-Cytoplasmic	31	51	0.93
Transmembrane Helix	52	74	0.92
Cytoplasmic	75	81	0.83
Transmembrane Helix	82	100	0.93
Non-Cytoplasmic	101	106	0.76
Transmembrane Helix	107	128	0.91
Cytoplasmic	129	137	0.76
Transmembrane Helix	138	158	0.91
Non-Cytoplasmic	159	163	0.79
Transmembrane Helix	164	185	0.94
Cytoplasmic	186	244	0.98
Transmembrane Helix	245	265	0.85
Non-Cytoplasmic	266	287	0.77
Transmembrane Helix	288	307	0.93
Cytoplasmic	308	313	0.93
Transmembrane Helix	314	334	0.95
Non-Cytoplasmic	335	349	0.86
Transmembrane Helix	350	373	0.90
Cytoplasmic	374	384	0.88
Transmembrane Helix	385	408	0.88
Non-Cytoplasmic	409	415	0.84
Transmembrane Helix	416	435	0.95
Cytoplasmic	436	465	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGSVLPQY IAGLSASFGA LCMGASIGWS SPVENMITVN TEYGFPISSS QFGWVSSLLT  60
   61 LGATVICIPI GFAIDWIGRR PTMLALIPPY MVGWVLMLFA KNVTMLYFGR FILGMCGGAF 120
  121 CVTAPMYCTE ITATALRGTI GSFFQLLIVS GVLYGYLVGA FLPLLTINIL CAILPVIFAI 180
  181 IHFFMPESPV YLAMKGRNDD AAKALQWLRG KDADIDDELK EILEESQKQI DMPQVNILSS 240
  241 LRRPIVLKGL GIAVLLQVFQ QWTGINAVLF YSASIFEDTG SDISGSDATL IIGVTQVTST 300
  301 LVAVAIIDKA GRRILLLISG VLMAVSTALM GVYFQLKEND PASMDNFGWL PISSICIFII 360
  361 FFSIGFGPVP WLVMAELFSE DVKSVAGSIA GTSNWLSAFV VTLLFPILKS SIGPGPTFWI 420
  421 FTAIAVIAFF YSLFFVPETK GKTIIEIQDL LSGGKGVKSD DKSQT