YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Picot-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.98
Transmembrane Helix	37	57	0.88
Non-Cytoplasmic	58	105	0.93
Transmembrane Helix	106	129	0.83
Cytoplasmic	130	137	0.83
Transmembrane Helix	138	157	0.93
Non-Cytoplasmic	158	167	0.68
Transmembrane Helix	168	188	0.85
Cytoplasmic	189	199	0.82
Transmembrane Helix	200	222	0.89
Non-Cytoplasmic	223	231	0.78
Transmembrane Helix	232	252	0.95
Cytoplasmic	253	288	0.94
Transmembrane Helix	289	310	0.75
Non-Cytoplasmic	311	337	0.87
Transmembrane Helix	338	359	0.88
Cytoplasmic	360	370	0.82
Transmembrane Helix	371	389	0.83
Non-Cytoplasmic	390	394	0.73
Transmembrane Helix	395	415	0.90
Cytoplasmic	416	425	0.80
Transmembrane Helix	426	449	0.87
Non-Cytoplasmic	450	463	0.78
Transmembrane Helix	464	485	0.92
Cytoplasmic	486	529	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFRRSSLNH RHRDGHVLVW NQRNLHESLE QQPQRCFATR YFVTFMLFLG MANAYVMRTN  60
   61 MSVAIVAMVN HTAIKSGEAE EYDDECGDRD IPIDDSQDGE FAWSSALQGY ILSSFFYGYV 120
  121 ITQIPFGILA KKYGSLRFLG YGMLINSVFA FLVPVAARGG GVWGLCAVRF IQGLGEGPIV 180
  181 PCTHAMLAKW IPPNERSRMG AAVYAGAQFG TIISMPLSGL LAEYGFDGGW PSIFYVFGIV 240
  241 GTVWSIAFLI FVHEDPSSHP TIDEREKKYI NDSLWGTDVV KSPPIPFKAI IKSLPFYAIL 300
  301 FAHMGHNYGY ETLMTELPTY MKQVLRFSLK SNGLLSSLPY LAMWLFSMFI SVVADWMISS 360
  361 KRFSHTATRK LINSIGQYGP GVALIAASYT GCDRALTLAI LTIGVGLNGG IYSGFKINHL 420
  421 DLTPRFAGFL MSITNCSANL AGLLAPIAAG HLISDPSKPM MGQWQIVFFI AAFVYIICGT 480
  481 FYNIFGSGER QYWDNPEDDE QKPALQTTVT TSPARLSNGS TAPAAISSS