YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220956502, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.92
Transmembrane Helix	24	44	0.87
Non-Cytoplasmic	45	92	0.94
Transmembrane Helix	93	116	0.83
Cytoplasmic	117	124	0.83
Transmembrane Helix	125	144	0.93
Non-Cytoplasmic	145	154	0.68
Transmembrane Helix	155	175	0.84
Cytoplasmic	176	186	0.82
Transmembrane Helix	187	209	0.89
Non-Cytoplasmic	210	218	0.78
Transmembrane Helix	219	239	0.95
Cytoplasmic	240	275	0.94
Transmembrane Helix	276	297	0.75
Non-Cytoplasmic	298	324	0.87
Transmembrane Helix	325	346	0.88
Cytoplasmic	347	357	0.82
Transmembrane Helix	358	376	0.83
Non-Cytoplasmic	377	381	0.73
Transmembrane Helix	382	402	0.90
Cytoplasmic	403	412	0.80
Transmembrane Helix	413	436	0.87
Non-Cytoplasmic	437	450	0.78
Transmembrane Helix	451	472	0.92
Cytoplasmic	473	516	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASKEAICG STEKDLEKPA LGCFATRYFV TFMLFLGMAN AYVMRTNMSV AIVAMVNHTA  60
   61 IKSGEAEEYD DECGDRDIPI DDSQDGEFAW SSALQGYILS SFFYGYVITQ IPFGILAKKY 120
  121 GSLRFLGYGM LINSVFAFLV PVAARGGGVW GLCAVRFIQG LGEGPIVPCT HAMLAKWIPP 180
  181 NERSRMGAAV YAGAQFGTII SMPLSGLLAE YGFDGGWPSI FYVFGIVGTV WSIAFLIFVH 240
  241 EDPSSHPTID EREKKYINDS LWGTDVVKSP PIPFKAIIKS LPFYAILFAH MGHNYGYETL 300
  301 MTELPTYMKQ VLRFSLKSNG LLSSLPYLAM WLFSMFISVV ADWMISSKRF SHTATRKLIN 360
  361 SIGQYGPGVA LIAASYTGCD RALTLAILTI GVGLNGGIYS GFKINHLDLT PRFAGFLMSI 420
  421 TNCSANLAGL LAPIAAGHLI SDPSKPMMGQ WQIVFFIAAF VYIICGTFYN IFGSGERQYW 480
  481 DNPEDDEQKP ALQTTVTTSP ARLSNGSTAP AAISSS