YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DAT-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.91
Transmembrane Helix	34	53	0.83
Non-Cytoplasmic	54	63	0.75
Transmembrane Helix	64	83	0.94
Cytoplasmic	84	102	0.78
Transmembrane Helix	103	123	0.85
Non-Cytoplasmic	124	233	0.75
Transmembrane Helix	234	255	0.88
Cytoplasmic	256	263	0.73
Transmembrane Helix	264	286	0.85
Non-Cytoplasmic	287	312	0.72
Transmembrane Helix	313	334	0.88
Cytoplasmic	335	345	0.76
Transmembrane Helix	346	371	0.82
Non-Cytoplasmic	372	394	0.73
Transmembrane Helix	395	419	0.78
Cytoplasmic	420	446	0.86
Transmembrane Helix	447	469	0.92
Non-Cytoplasmic	470	477	0.81
Transmembrane Helix	478	500	0.95
Cytoplasmic	501	520	0.96
Transmembrane Helix	521	541	0.96
Non-Cytoplasmic	542	557	0.91
Transmembrane Helix	558	580	0.93
Cytoplasmic	581	631	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTGHISKS KTPTPHDNDN NSISDERETW SGKVDFLLSV IGFAVDLANV WRFPYLCYKN  60
   61 GGGAFLVPYG IMLVVGGIPL FYMELALGQH NRKGAITCWG RLVPLFKGIG YAVVLIAFYV 120
  121 DFYYNVIIAW SLRFFFASFT NSLPWTSCNN IWNTPNCRPF ESQNASRVPV IGNYSDLYAM 180
  181 GNQSLLYNET YMNGSSLDTS AVGHVEGFQS AASEYFNRYI LELNRSEGIH DLGAIKWDMA 240
  241 LCLLIVYLIC YFSLWKGIST SGKVVWFTAL FPYAVLLILL IRGLTLPGSF LGIQYYLTPN 300
  301 FSAIYKAEVW VDAATQVFFS LGPGFGVLLA YASYNKYHNN VYKDALLTSF INSATSFIAG 360
  361 FVIFSVLGYM AHTLGVRIED VATEGPGLVF VVYPAAIATM PASTFWALIF FMMLLTLGLD 420
  421 SSFGGSEAII TALSDEFPKI KRNRELFVAG LFSLYFVVGL ASCTQGGFYF FHLLDRYAAG 480
  481 YSILVAVFFE AIAVSWIYGT NRFSEDIRDM IGFPPGRYWQ VCWRFVAPIF LLFITVYGLI 540
  541 GYEPLTYADY VYPSWANALG WCIAGSSVVM IPAVAIFKLL STPGSLRQRF TILTTPWRDQ 600
  601 QSMAMVLNGV TTEVTVVRLT DTETAKEPVD V