YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	spin-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.95
Transmembrane Helix	114	132	0.86
Non-Cytoplasmic	133	151	0.89
Transmembrane Helix	152	173	0.92
Cytoplasmic	174	180	0.83
Transmembrane Helix	181	200	0.94
Non-Cytoplasmic	201	206	0.75
Transmembrane Helix	207	229	0.85
Cytoplasmic	230	240	0.79
Transmembrane Helix	241	260	0.94
Non-Cytoplasmic	261	270	0.78
Transmembrane Helix	271	290	0.95
Cytoplasmic	291	321	0.96
Transmembrane Helix	322	343	0.92
Non-Cytoplasmic	344	365	0.91
Transmembrane Helix	366	388	0.88
Cytoplasmic	389	400	0.76
Transmembrane Helix	401	421	0.94
Non-Cytoplasmic	422	431	0.74
Transmembrane Helix	432	455	0.86
Cytoplasmic	456	466	0.83
Transmembrane Helix	467	486	0.71
Non-Cytoplasmic	487	554	0.80
Transmembrane Helix	555	578	0.83
Cytoplasmic	579	605	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKHQKQSY QPLPTAAAMD NPAMIQSSGS SGSSSSEEGG SREDVANLSP LGLPTTYSSQ  60
   61 QLMPSDTDSM EEERHRLRPH HHHHHPLGEH HHIPGIPPSA VVPSRLSSVG RSQWFTVTVL 120
  121 CFVNLINYMD RFTIAGVLTD VRNDFDIGND SAGLLQTVFV ISYMVCAPIF GYLGDRYSRP 180
  181 WIMAVGVGLW STTTLLGSFM KQFGWFIAFR ALVGIGEASY STIAPTIISD LFVHDMRSKM 240
  241 LALFYFAIPV GSGLGYIVGS KTAHLANDWR WALRVTPILG IVAVFLILLI KDPVRGHSEG 300
  301 SHNLEATTYK QDIKALVRNR SFMLSTAGFT CVAFVAGALA WWGPSFIYLG MKMQPGNENI 360
  361 VQDDVAFNFG VITMLAGLLG VPLGSFLSQY LVKRYPTADP VICAFGLLVS APLLTGACLL 420
  421 VNSNSVGTYA LIFFGQLALN LNWAIVADIL LYVVVPTRRS TAEAFQILIS HALGDAGSPY 480
  481 LVGAISEAIM KHLHKNPSDS GLTTELRSMS QVAGSAISNA TQVIAEATTS LMETARSSAS 540
  541 QEYSDVEQFE GLQYALFSTS FVEVLGGIFF IFTACFIIKD KYNATRGLQD ATAQQQQRDE 600
  601 RGQIA