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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Sox15-PA
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSYDHEHP HHLLTNYNSK KYPHVSRTPE YSHSTGSDYP EHGGYLTDGR LMHESNSDAG  60
   61 IYHVRQGSEH SSPSLHSPAI QSSGYENEHL NEAVLAAHSH SHSPMPMVSS AYVGGGTASG 120
  121 SLINSNIPLL GGGGNSVLNK FLSHPHAGMV GGGTGQMEDC TSHSPIEAAS MWSYDYKGDL 180
  181 CAPNCGYLER HKPLPADLKY RPGGTQSKSA KESRIRRPMN AFMVWAKIER KKLADENPDL 240
  241 HNADLSKMLG KKWRSLTPQD RRPYVEEAER LRVIHMTEHP NYKYRPRRRK QSKLRAMQPG 300
  301 GKEQSESSPN PGTGGSKSNP KLATPPLATA SSSYTTPTDE STCNSTNQNH GQSTPGGLYE 360
  361 QPLKPTYSPS SVDCYSNADS TEQIESLAAN CPPALLNESS PTGGGYDNSL LLKKLTKPSP 420
  421 SRAAKSRQEK LAKSEEKNKG SQSQGQSQQG IYAATYPLAP TSVAVVAARG MYVTCNNRGL 480
  481 LDHGHSVKGT FYPPVSVSED DNSTSMRNSI SALQQHCNVV TSTPSSSGGT MPTSEMSSYT 540
  541 VSMADNCGNL RLSMNELSGN EYLPSANAYG MQYEDFLRYQ SNDMDYSTSA VEHKETTSDS 600
  601 ASGQKCLKYP DTNQNYDDYE AEAYSNAMLP ATAASYYTQL PYPPTSLAAF PLQLAVPFQQ 660
  661 TTSGAYGAQP IQSGYLHYGN YGGYEGMAQS QPQNQAPVHH QQASHSAPPS LSVPPNQTVT 720
  721 SNSAAISMQQ HHHHHFGPAP GMVGVGVGVG VGVGVGEMLF EQQQRKDDEI SNILAGVRKT 780
  781 CYSN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle