YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Dh31-R1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQIGNPNA TFSGSGSGSG TNVASIAESV AESGPDFDAL RAACETRLNA SGQLAGSGGP  60
   61 GAEAGTHCAG TFDGWLCWPD TAVGTSAYEL CPDFITGFDP ARYAHKECGL DGEWFKHPLT 120
  121 NKTWSNYTTC VNLEDLNWRH TVNLISEVGY GTSLLAILLS LAILGYFKSL KCARITLHMN 180
  181 LFASFAANNS LWLVWYLLVM PNSELLHQSP MRCVALHITL HYFLLSNYSW MLCEGFYLHT 240
  241 VLVAAFISEK RLVKWLIAFG WGSPAIVIFV YSMARGLGGT PEDNRHCWMN QTNYQNILMV 300
  301 PVCISMFLNL LFLCNIVRVV LLKLNAPASI QGSCGPSRTV LQAFRATLLL VPLLGLQYIL 360
  361 TPFRPAPKHP WENTYEIISA FTASFQGLCV AILFCFCNGE VIAQMKRKWR MMCFSNRPRT 420
  421 NSYTATQVSF VRCGPPLPGE EKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	147	0.92
Transmembrane Helix	148	167	0.93
Cytoplasmic	168	176	0.82
Transmembrane Helix	177	199	0.90
Non-Cytoplasmic	200	223	0.84
Transmembrane Helix	224	246	0.78
Cytoplasmic	247	254	0.77
Transmembrane Helix	255	274	0.93
Non-Cytoplasmic	275	296	0.93
Transmembrane Helix	297	322	0.90
Cytoplasmic	323	340	0.97
Transmembrane Helix	341	361	0.93
Non-Cytoplasmic	362	379	0.89
Transmembrane Helix	380	402	0.92
Cytoplasmic	403	443	0.99