YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Nmda1-PB, FBpp03...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDPNQQYNY GGGNPPQGGY GGYPPQGGYP PQGPPQGYPP YAQGGAQPYP QPYGQGPPPG  60
   61 GYAPQPGFIQ PPPSAGGYGA YDDPESQPKN FSFDDQSIRR GFIRKVYLIL MGQLIVTFGA 120
  121 VALFVYHEGT KTFARNNMWL FWVALGVMLV TMLSMACCES VRRQTPTNFI FLGLFTAAQS 180
  181 FLMGVSATKY APKEVLMAVG ITAAVCLALT IFALQTKYDF TMMGGILIAC MVVFLIFGIV 240
  241 AIFVKGKIIT LVYASIGALL FSVYLIYDTQ LMMGGEHKYS ISPEEYIFAA LNLYLDIINI 300
  301 FMYILTIIGA SRD

Type	Start	End	Confidence
Cytoplasmic	1	105	0.95
Transmembrane Helix	106	127	0.93
Non-Cytoplasmic	128	137	0.88
Transmembrane Helix	138	158	0.94
Cytoplasmic	159	167	0.80
Transmembrane Helix	168	188	0.86
Non-Cytoplasmic	189	194	0.75
Transmembrane Helix	195	214	0.94
Cytoplasmic	215	221	0.72
Transmembrane Helix	222	243	0.93
Non-Cytoplasmic	244	248	0.71
Transmembrane Helix	249	267	0.95
Cytoplasmic	268	287	0.75
Transmembrane Helix	288	310	0.86
Non-Cytoplasmic	311	313	0.75