YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8594-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	147	0.98
Transmembrane Helix	148	169	0.94
Non-Cytoplasmic	170	201	0.96
Transmembrane Helix	202	223	0.88
Cytoplasmic	224	251	0.88
Transmembrane Helix	252	271	0.92
Non-Cytoplasmic	272	314	0.90
Transmembrane Helix	315	338	0.86
Cytoplasmic	339	348	0.88
Transmembrane Helix	349	373	0.87
Non-Cytoplasmic	374	398	0.91
Transmembrane Helix	399	419	0.93
Cytoplasmic	420	437	0.91
Transmembrane Helix	438	459	0.94
Non-Cytoplasmic	460	510	0.93
Transmembrane Helix	511	531	0.83
Cytoplasmic	532	536	0.52
Transmembrane Helix	537	560	0.80
Non-Cytoplasmic	561	570	0.69
Transmembrane Helix	571	594	0.72
Cytoplasmic	595	601	0.54
Transmembrane Helix	602	619	0.58
Non-Cytoplasmic	620	813	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDRKALITL DGESSAEDDP IILQKEAGPT SKAVQDFGLH QREEPSTSAL ARRATLSGNN  60
   61 HLLDDSQPLL MGNNSVPPDI PINGSAGSPN RNINSSEPIF HLRSRTAAAS TPNYESLDYE 120
  121 VCENTLFQDE QRKRLTERFS LRKDIIRWII FIQIGIITAL IACTIDIIIE ELSIRKYTFL 180
  181 YNSVKENVPL SDASDRDLLI PYLYWLLFSI VPVAFGAAMV TYIEPITAGS GIPQVKSYLN 240
  241 GVKIPRIVRI KTLAVKAIGV ITSVVGGLAG GKEGPMIHAG AVVAAGISQG KSTTFLKDFR 300
  301 IFKAFRDDHE KRDFVLGGGA AGVSAAFGAP IGGMLFSLEE AASFWNQNLI WRTLVASIIS 360
  361 VFTLNIVLSA YHGLNDFTFT GLFNLGKFDT PLKFDYFELP IFMILGVTGG LLGAAWNSLN 420
  421 TKINKFRKRF IPWKIGKVLE AVVVAMMGVT LACLMIYFIN DCRPLGNDPT NNPVQLFCED 480
  481 NEYNAVAALW FQTPEATVRS LFHDPPGSHK ILTLALFTVV YYVLSCATFG LNVSLGVFIP 540
  541 TALVGAAWGR LLAMLTYYVF PQAEFLHPGK YALIGAAANL GGVLRMTISL SVILMETTGV 600
  601 ETSFFFPLII ALISAKWVGD YFNEGIYDTQ IQVNHVPMLT WEPLPQYKGL KAREILSKPV 660
  661 ICIKIRDSAN YIYEMLKKCD HNGFPVVDDV CGDRRSEGRV CGIILRSQLI VILLKSLYVE 720
  721 NKRFWLPETS IQTFRDLYPR FPSIKSVRKL DEKINYTVDL SMFMNPSPIR VNPHDSVPRI 780
  781 FQIFRALGLR HLLVINHENR IAGIITRRDF IYK