YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8831-PA
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFGSNTSL GATSTPAKTT GGLFGSPFGG TAATSQPAPA FGAQATSTPA FGAQPATSAF  60
   61 GAGSAFGATA AAPAFGAATG TSAFGGSAFG STPAFGAATT TTAGTGLGGG GFGGFGAAPA 120
  121 TSQAGLFGAP ATSAAPPAFS GFGQQAAAST APASGFSGFG TTTTSAPAFG GFGTSQSTGF 180
  181 GGGAFGSTFG KPANTTVTPG FGGFGGTSFM LGQPQQQPAP ISADEAFAQS ILNVSIFGDE 240
  241 RDKIVAKWNY LQATWGTGKM FYSQSAAPVD ITPENVMCRF KAIGYSRMPG KDNKLGLVAL 300
  301 NFCRELSAVK PHQQQVIQTL HSLFGSKPNM LVHIDSIKEL ENKKCQIVIY VEEKLQHAPN 360
  361 ESKRILATEL SNYLNQATLK PQLNNLGVVE ALALVLPDED QLREYLENPP RGVDPRMWRQ 420
  421 ANSDNPDPTL YIPVPMVGFN DLKWRVKCQE QETDTHALYI KKVESELTEL KKRHATATAK 480
  481 ILEHKRKLAE LSHRILRIIV KQECTRKVGT SLTPEEEALR TKLQNMLAVV SAPTQFKGRL 540
  541 SELLSQMRMQ RNQFAANGGA EYALDKEAED EMKTFLTMQQ RAMEVLSDTV NKDLRALDVI 600
  601 IKGLPELRQS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.75
Transmembrane Helix	21	40	0.48
Non-Cytoplasmic	41	55	0.45
Transmembrane Helix	56	89	0.66
Cytoplasmic	90	93	0.32
Transmembrane Helix	94	118	0.78
Non-Cytoplasmic	119	162	0.45
Transmembrane Helix	163	185	0.59
Cytoplasmic	186	192	0.56
Transmembrane Helix	193	212	0.67
Non-Cytoplasmic	213	610	0.92