YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8234-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.79
Transmembrane Helix	17	38	0.88
Cytoplasmic	39	46	0.69
Transmembrane Helix	47	68	0.90
Non-Cytoplasmic	69	74	0.56
Transmembrane Helix	75	93	0.89
Cytoplasmic	94	102	0.80
Transmembrane Helix	103	124	0.88
Non-Cytoplasmic	125	129	0.78
Transmembrane Helix	130	149	0.92
Cytoplasmic	150	215	0.94
Transmembrane Helix	216	237	0.90
Non-Cytoplasmic	238	250	0.84
Transmembrane Helix	251	271	0.94
Cytoplasmic	272	277	0.92
Transmembrane Helix	278	300	0.91
Non-Cytoplasmic	301	311	0.81
Transmembrane Helix	312	335	0.86
Cytoplasmic	336	346	0.81
Transmembrane Helix	347	368	0.86
Non-Cytoplasmic	369	377	0.82
Transmembrane Helix	378	399	0.92
Cytoplasmic	400	433	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRTITSFE VTKDAGSWVG GIMPLAALAG GITGGPLIEY LGRRSTILAT AVPFIVSSLL  60
   61 IACAVNVIMI LCGRFLTGFC VGIASLSLPV YLGETLQPEV RGTLGLLPTA LGNIGILVCY 120
  121 VAGSFMNWSM LAFLGAALPV PFLILMIIIP ETPRWFVNRG QEERARKALK WLRGKEADVE 180
  181 PELKELMQSQ ADADRQATQN TCLELFKRNN LKPLSISLGL MFFQQFSGIN AVIFYTVQIF 240
  241 KDAGSTIDSN LSTIIVGVVN FFATFMGIIL IDRLGRKILL YVSDIAMIVT LSILGGFFYC 300
  301 KAHGPDVSHL GWLPLTCFVI YILGFSLGFG PIPWLMMGEI LPAKIRGPAA SVVTAFNWFC 360
  361 TFVVTKTFQD LTVAMGAHGA FWLFGAICIV GLFFVIIFVP ETRGKSLEEI ERKMMGRVPM 420
  421 SSVVNIKPFP FNM