YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0308560, CG1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDKFNTNAF ISFGLGFILM WLSEATEAHM NYTAKPRVVL PPNYVKEIRP PSKKGSPVIV  60
   61 DFSIFVVDIN SINVEDMDFR VDMFIHQRWL ESRLEIPDDI FEEGDDYVTL LPEVFENFWQ 120
  121 PDPYFLNSKI AEIATLTHKF TSVTLYKNKT VRYAARMHAI IACQMEFQLY PMDIQVCPIY 180
  181 IESFSSNNQK VKLRWSDSGV TLNPELKLLQ YNLGQPLELE ESDGYMPEKV GNFSRLTVYF 240
  241 RFERQIGHHL IQTFAPSSLV VMLSWFSFWL GLDAIPGRVT LLVTCMLTLV TMFTGADIPP 300
  301 VAYVKALDLW MAGCMLSVFA ALAEFVVVKV LDVQYQYQVN RIPKVLPMRI SNMEKGQCAT 360
  361 VASWEGGAVR SRKATQTPTT PGQTSLQGNG GPPKPARRQS LLSVAWTDTD TGVEKIMWRE 420
  421 IDKVSRAVFP ILFFVFVLLY WPILLMKSS

Type	Start	End	Confidence
Signal Peptide	1	28	0.89
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	248	0.98
Transmembrane Helix	249	269	0.93
Cytoplasmic	270	278	0.75
Transmembrane Helix	279	298	0.93
Non-Cytoplasmic	299	308	0.72
Transmembrane Helix	309	328	0.95
Cytoplasmic	329	423	0.97
Transmembrane Helix	424	444	0.92
Non-Cytoplasmic	445	449	0.83