YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sut4-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	28	0.94
Non-Cytoplasmic	29	48	0.95
Transmembrane Helix	49	71	0.93
Cytoplasmic	72	79	0.83
Transmembrane Helix	80	101	0.90
Non-Cytoplasmic	102	107	0.64
Transmembrane Helix	108	126	0.96
Cytoplasmic	127	135	0.80
Transmembrane Helix	136	155	0.93
Non-Cytoplasmic	156	161	0.74
Transmembrane Helix	162	182	0.91
Cytoplasmic	183	241	0.95
Transmembrane Helix	242	263	0.91
Non-Cytoplasmic	264	279	0.82
Transmembrane Helix	280	300	0.95
Cytoplasmic	301	306	0.95
Transmembrane Helix	307	329	0.93
Non-Cytoplasmic	330	336	0.81
Transmembrane Helix	337	360	0.91
Cytoplasmic	361	371	0.89
Transmembrane Helix	372	393	0.93
Non-Cytoplasmic	394	399	0.78
Transmembrane Helix	400	424	0.91
Cytoplasmic	425	444	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTATQFIVG FIGALGAFCL GAVIGWSGPV ENEVKNSNAY NFTPRQTEWG LVGSLMTLGA  60
   61 AFSCIPVGVL IGKIGRKTTM LILLPPFFIG WLLILLASHI AMLLLGRFVV GFCGGAFCVT 120
  121 CPMYVTEIAQ VQYRGTMGCF FQLLIVFGIL YAFVVGGFVK TFYFNIACAI LPVIFFVLMI 180
  181 FMPESPIFLA QKGKAEKAEK SLKFLRGKDA DVSGELKEMS AEGQKEKASV GKILCRRITL 240
  241 KGLFLSIGLM LFQQMTGINA IIFYSTFIFE TAGSTLEPRI STIIVGIVQA IATIISILVI 300
  301 EKVGRKILLL VSACMMGIST LIMALYFGML MKSGVGWLAL IAVCVFIIGF SLGFGPVPWL 360
  361 MMAELFAEDV KALAGSIAGT TNWCFAFIVT LLFPVLNDII GATACFAIFF GFAVAAFVFI 420
  421 LFLIPETKGK TLNEIQAKMG EKAE