YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24651961, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.65
Transmembrane Helix	24	48	0.84
Cytoplasmic	49	102	0.68
Transmembrane Helix	103	125	0.89
Non-Cytoplasmic	126	153	0.64
Transmembrane Helix	154	174	0.94
Cytoplasmic	175	180	0.64
Transmembrane Helix	181	202	0.88
Non-Cytoplasmic	203	209	0.54
Transmembrane Helix	210	231	0.83
Cytoplasmic	232	264	0.74
Transmembrane Helix	265	288	0.90
Non-Cytoplasmic	289	299	0.63
Transmembrane Helix	300	322	0.79
Cytoplasmic	323	342	0.61
Transmembrane Helix	343	363	0.71
Non-Cytoplasmic	364	368	0.50
Transmembrane Helix	369	391	0.79
Cytoplasmic	392	422	0.76
Transmembrane Helix	423	446	0.90
Non-Cytoplasmic	447	461	0.66
Transmembrane Helix	462	481	0.89
Cytoplasmic	482	528	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPIEGEQE EKPPPSRAKR ITYLVLHVLL HIIFISYFTA ATIIFIFYDK DSKECWPNRG  60
   61 SEATTESIDN STEDDDDDDY DTEETSEKPV PEVKPKLLCQ INWCHGYGFL IVLFILFYIL 120
  121 WLYYWVFKPF VGIKLYNNYL EPVIDKWIAF SRQWIVSGVM LAIVLAVVVA YLGFECRNDA 180
  181 YKAIGLLGPV CFVLIGFAVS KHHLQVPWRI VTHGLLGQLL LGILCLRLPF GRSIFQCLGD 240
  241 KVTIFLNYAQ HGARFVYGDR ICDEYVFAFA ILAVVFFFSV ITSIMYYLGW MQFILNGFGF 300
  301 LLQAMVGTTV CESVNAAGNV FLSMTESPLV IRPYIEILTV SELHAICTSG YATVAGTVLG 360
  361 AYVSFGASAS FLIAASVMAA PGSLAFAKLF YPETEESLTR SDNIKLESST DTSILDAAAS 420
  421 GAAAALLIVL GIVSNIIAFL AIVFFLDAVT EWIFELIGLH NITLLYILSQ IFIPIVFVMG 480
  481 VPWHDCQAIG LVVAQKSFIN EFVAYRNLGI LVSDKKVDVS THLHILFL