YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: jing-PH, jing-PD
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPHILGSAS GSSSTAAASP PTSSASQTPP SPAIHHSHLS QHNATSAMSK PTTPQRHGNP  60
   61 SLLPTLQWPW NTSLGSTSTA VPAASANKNK RTAAGSGAAL GLSGEGSCLT GGGAASAKKA 120
  121 RSDLPGSFDA SKRLKVAAME ESQTKITGFF KSQMKPSPGG GKLSPQPGQQ SNPANTLTMS 180
  181 TPATTASLNK YFNILSQLKE QKAQQQQQQQ QASKTLPTPA PVAPVPSAPP VAPVVVTPSP 240
  241 SLPVPALKKI ERSNKQPAKI AQVAPNLRKT PSSGSSGSSS SSSSSSSNGS NTGKSPTKKH 300
  301 VAIAPRTPEM KQQQQQGKAA MVYRPPVTST ALKQKQISPP APVAAHTPAP APALNPTPAP 360
  361 ANPTLYQLPV QLPNLVQLPP QLAAAANIMQ LNNVAKAAVA AAATNNAAAQ AAQAAQAAAA 420
  421 QYFLNGTVFK LQQVTTATTT TATTATAAAA PAGNPFGLLN LATAGNPFGL PNANGQFPIE 480
  481 AIPGAGSYLH HQLLLARQNN MSLNETMASN SCGNMNFVNP LNNQQVGLKD NKLYIVNSAE 540
  541 YLGYLMSLQI ALNNQQHQQQ QIISATQPPP LAATNNNSTN TATQPPPLAA TNNTNSNTAN 600
  601 NSTASNSINH NASNNLSNIN NTAIQPQRAI VKPPLHSSTQ PPPLVTISSM PACSPAAASS 660
  661 PAAKRSLPAA KPYQKRLTAK GRVGTAPIIA TPTTPPPLVP TSATKELGQL RKSTGTTGTP 720
  721 TGTPTPTPPL VSIAPSKLTP TLSVSKQGPT MKLANSAPDL FDLVKNSKLV AKVSQPLTPL 780
  781 PFSSPSSSSN GSHGSHGMRS SPALSTSNSC TLSAFSKIKV ETTELASQTG SLTSSSIPTI 840
  841 SLKPQSFAGQ LPKREPESET DTLKHDLLPD CTNSNSNSNS CSSSTYSHSV SSAADLSLEA 900
  901 STPAPSPSPS ASPSGLGSPS PAASNLSASS RRAASQTDML SELVTSSCIS SGGDDCSQAT 960
  961 DSPPMPALPL AKSEDATTPI STVSGGSSSG SSNYDEEDDK SVASLETHQT HKRLRDLPTP1020
 1021 ESGIGGSLSN SESSNSIADA ISSKSASVGP PTTAASSASS SASDSNSLAS NAPSPASPED1080
 1081 CSAAPSPACS ASTTGSIPPS TVVDIAMVEA TSKSLPKSAI SPILSQPKTI RFPAGAGASG1140
 1141 KGGKRHDGVC YWDKCNKKHE SNSKLLDHMQ THHVNTQTGP FACLWVGCKV YNKESCSRRW1200
 1201 LERHVLSHGG SKQFKCIVEG CGLRFGSQLA LQKHVNNHFN ATDNARESTS KRTSDPPVPK1260
 1261 QLRKNGKKLR YRRQPFSARM FDFFDTGIME GLQHRLRQIS TLTNGAQAIE FQGQCMMRRR1320
 1321 NSQGGYECFV RWSPREIISD EWLPECLNRT RQHTKVLHIK QMRPAEKTRV DSLLSTAFRL1380
 1381 RYDSHLFADD YNVNEQQVGE ASGSDCDEDG DGDQEEEDLE DQDEDEEEDG SSSSRSASCE1440
 1441 TVSSYQQVLS IAKLQMQQRR KHPRKPPKVT PPAREKLVPT DALVPI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle