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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCAP-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.48
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATDVSAR AAAAASSTSP RTAASNSSGL AGKPPGPAPS SAGVAGAAGA SSTGLPASVS  60
   61 HFYYKHGLFL SSYPTCASSI AFMAILLSCY PLINIPLPGT IPTKIVVPYE TGSGSLSWHS 120
  121 LNTSSTTPQE PHPSGEPWPP EPQVLNSSTT DRSPPPLLPW AQSSPAFFYV QQITLRTSVL 180
  181 PWTEGMQLMD AFRAPLHEVF KLLEIVRNHQ SSENKRTLEH NCLHVDNVKR GTHGQLDQIF 240
  241 PEYGCLLLSP ANLWTQNSQN FTRDTNILNT IFQYHNLQKS KVSAAEMLFG LPMQDTGFKR 300
  301 YPLRARSRII QYALTLFLKH NDMEYLDTLK EKLLRHYPPL PLASASAEEP TTITYIFYPG 360
  361 EYRMWELVPY TVAFMLVFAY VYFSVRKIDV FRSRFLLALC SVITTAGSLA MSLGLCFFFG 420
  421 LTISLQSKDI FPYLVILVGL ENSLVITKSV VSMDETFDVK IRVAQALSKE GWHISKTLLT 480
  481 EITILTIGLA TFVPVIQEFC IFAIVGLLSD FMLQMLLFST ILAMNIKRTE YTAEAKHLPK 540
  541 MLLSCTQGAG RQDFRFFGAA PALPPFVPGT FQRSQSHPKL CFADPASVSD RTSLVNGHSS 600
  601 PEQRIPKRIK IVNFWARTRF FQRAFMIWMI VWICSIVYNS GYLEQLFSMQ SNGTMTATLE 660
  661 LQRRLQAGRG AVSSFFEGWQ ADGQRATSAP SGSGFSTPIK APLAIDINET AEEMMRLRYP 720
  721 SFDLNYFLSN FHWSTIMKQY NISLSGHYVT LLPTIRLSHA IAPELATLLR NPQEQLQQNF 780
  781 QWKALAAALD PLDFNDDDVR RESPMVMAEG LPLVPKSPME IFFAILLCCI SIFVLCYTMV 840
  841 VFYRCICTRN YAEWRSSWHE SEAPYKQTEQ ILEGVPTQIA GHKHRIECLV SDGAYIISCC 900
  901 LKGQIRVWDA RSGEQLTSIS RSDIQISQQR TDGQTLVRKL AVSPVWCLDY FDNLIAVGCA 960
  961 NGRVELWESP AGLLKCAYQE DAKRNQGITH IHLNGDRVIV ARLNGRLDFY RLETYYKGKQ1020
 1021 IDWGFTSAYR RTHVRTGSTG SLGLMLQQQR CQQEASQKTT KEEMKITLEG VRLAHQQPIT1080
 1081 CMQVVNDMVF TGSQDHTLKV YCLNKSDVEY TLHGHCGPVT CLFVDRWQPG TGGSGSQDGL1140
 1141 LCVWDLFTGA CMYNIQAHDG AVSCLACAPS YVISLGTDER ICVWERFQGN LLTTINISNA1200
 1201 YSSLLMLTPS LLVTSKMGSL IVWDVRTGQP AREVKLDFAN LQLCPKIMML ACDSVVCDYG1260
 1261 NEIRVVRFPI VADKCH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle