YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7882-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.99
Transmembrane Helix	108	129	0.92
Non-Cytoplasmic	130	161	0.94
Transmembrane Helix	162	183	0.94
Cytoplasmic	184	192	0.80
Transmembrane Helix	193	212	0.96
Non-Cytoplasmic	213	220	0.84
Transmembrane Helix	221	242	0.92
Cytoplasmic	243	253	0.88
Transmembrane Helix	254	275	0.89
Non-Cytoplasmic	276	284	0.77
Transmembrane Helix	285	306	0.89
Cytoplasmic	307	370	0.98
Transmembrane Helix	371	393	0.90
Non-Cytoplasmic	394	410	0.90
Transmembrane Helix	411	431	0.92
Cytoplasmic	432	438	0.92
Transmembrane Helix	439	461	0.91
Non-Cytoplasmic	462	465	0.85
Transmembrane Helix	466	487	0.86
Cytoplasmic	488	504	0.74
Transmembrane Helix	505	525	0.92
Non-Cytoplasmic	526	530	0.83
Transmembrane Helix	531	551	0.92
Cytoplasmic	552	586	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVISALDN RLLSGKMPSP SRRMIYDPQY SIHQHSAHKS AIRNTTTHEI RNGKAKSRRI  60
   61 ASGAIINVLR GAANGTRKWQ AGKAKEPQYR GKCPNSPRFQ EERPQWSWSL NWAAIGSSLG 120
  121 AAVPVGYCTG VMNSPAELMR SWCNETLIAS YDLNLSDAGL EILWSAIVSI FLVGGAIGSV 180
  181 VGATMANRFG RRGCFFICGL LLGLGAISFY ACRPLRSVEL LLLGRMMVGL AGGLLTSFMS 240
  241 MWHSEISALS QRSTLAPLCP MGLTLGVVIA QVCSLRSVLG GPENWHFGLA FYGLLVLVCY 300
  301 APFRWYPESP KWLFIVQGRK EDARRQLQLL RGYTAGSAAL KAEMEEMEQE SACEVKTSSL 360
  361 MQVLRDPQLR LPLIIVCAFL GGQQLSGINA IFYYSVSIFR KAGLSSQASE WANLGAGSLN 420
  421 LFASMLGPVL LERVNRRPLM LFSTFFCAVF LLLFAIMLFF IESYSWFGMG CIGCIFLYIF 480
  481 FFQFGLGPMP FFIGAELFEL ATRPAAMSLG SLAYWLCNFI IGMAFPTMQN LWGALVFLPF 540
  541 SVTCLLIFGL TKRYLPETRG RHPSEVAPLV ALGFKSKVML PKQMSI