YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24585743, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.73
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	164	0.68
Transmembrane Helix	165	183	0.93
Cytoplasmic	184	200	0.63
Transmembrane Helix	201	224	0.82
Non-Cytoplasmic	225	235	0.73
Transmembrane Helix	236	258	0.84
Cytoplasmic	259	276	0.68
Transmembrane Helix	277	297	0.77
Non-Cytoplasmic	298	319	0.93
Transmembrane Helix	320	342	0.92
Cytoplasmic	343	413	0.98
Transmembrane Helix	414	434	0.95
Non-Cytoplasmic	435	440	0.80
Transmembrane Helix	441	457	0.96
Cytoplasmic	458	467	0.78
Transmembrane Helix	468	488	0.91
Non-Cytoplasmic	489	519	0.89
Transmembrane Helix	520	542	0.87
Cytoplasmic	543	558	0.86
Transmembrane Helix	559	579	0.91
Non-Cytoplasmic	580	599	0.76
Transmembrane Helix	600	622	0.91
Cytoplasmic	623	634	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCILLLLWLG CAFIVFVFAA EQSTRSTMIT VMPNKTAMTK VEPPNNALKV TLHGPVQSNG  60
   61 ADGVDLRLEW RSSDLNVTYR RTEVWNIGIS NDDTAYAKVS RNFMVKRTGG ADSQAVISLE 120
  121 SKRNSPISLH VVIDTNPMVT DMCLVCAGLL ILGLYMLIIF DVIDHTFAAL IIATTAVAIL 180
  181 AILEHRPSMR AIVSFVNFEP LMLLFGLMTI VDIMATTGVF DFLVVWTYRI SRGRPWPLIF 240
  241 FLSMLTAFLS AFLNSDIMAL SLTPITIRLC EEMSLRTSYV LVVMAIFADM GGALTPLGNP 300
  301 PNAIVTTSPV AVAEGVDFAH FIIHMMPGVL AAMFVVFGII YVTHRKSIFV LDQNQLDLME 360
  361 ERARGKKPPS QETLDRIALL KGSLPGKYWL RPVEGYPETL AELEASSRIL DKPLLVRCCI 420
  421 ALIFAFLCML LHSIPKVADG ASLGWVTLLA AFLLIILDDK NDLNATLGII QWTILLFIAA 480
  481 LFVLSEAVDQ LGFFEWLGDR TVGFLRSLEP QNQIAVTTMV ILWTTALLTI FIDNAAVTIF 540
  541 MLKFSIEMAS NDDIPLPPMF WALTFGACFG GNGSLFGAVS NEIIALIALQ HGYKISFWHF 600
  601 FAIGFPLMLV TMVIGSGYLL IAHSVLSWNL HLVR