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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Nhe2-PB, Nhe2-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIRTEQDYD SATPALAQQM NLARRACWRI KSYSSESLFK TYASVITDTS ANEIDAEAPP  60
   61 PPRDKTKTRI EPQIAPAKRN SSCTSSDWRG MFSKRTLLIC ALALILGSAQ ARPNTSAVGV 120
  121 APRKVSQDIV DAVTQLNLGQ SAPIDAVDVG LDPTPSARVP RPEPLKSGDE NAKGDEGHKM 180
  181 ERYPLSSVDF ARVKTPFIIG IWILSASIAK IGFHMTPKLH LIFPESCLLI VVGVVIGVVL 240
  241 YFCTDVAVSP LTPNTFFFYM LPPIILDAGY FMPNRLFFDN LGTILLMAVV GTIFNIATIG 300
  301 GSLYACGKMG IYGESETPGL MDVFLFASLI SAVDPVAVLA VFEEIHVNEI LYIVVFGESL 360
  361 LNDAVTVVMY HMMESYNEIG LDKIIAQDIA SGVGSFFVVA LGGTAIGIIW GFLTGLVTRF 420
  421 TDHVRVIEPI FIFVMAYLAY LNAEIFHMSG ILAITFCGIT MKNYVESNIS QKSHTTVKYA 480
  481 LKMLSSSAET IIFMFLGVAT VNNMHVWNTW FVVLTIAFCS VFRVIGVILL SALANRFRLH 540
  541 KLSRVDQFVM SYGGLRGAVA FALVLLVDEN VVKQKNMFVT TTIAVIYFTV FLQGITIKPL 600
  601 VKILNVKRAN KRKPTMNERI HERFMDHLMA GIEDIVGKTG NYNVRDKFKR FDNRFIRPLL 660
  661 IRDLKGAEPK IIETYSKLTM RDAMEVMRRN PSTIGQMTGT ESMSALFRNY TNNYIGGSPS 720
  721 LTNLDNTCSR NLDMAELDYN PSKKDLTDAR IHHLLAEELK PYRRHRRLSY SRHAVDDRDL 780
  781 STQVNYKMQM NFRRMFNDRK HHKRSKRGAS NKEAKENVKQ NHVSFHDFQQ NGTTKQLTNA 840
  841 EECQQNPNEI NVVGPSDDWD DGLTFTAKSS PDSDRANNNS LIAHIQNLPG FDASKARIVV 900
  901 QHYAPKADDN PDTDIESPEQ AIGPTAAELI LPWRRDRSYQ SIVAEHPIPE EDRNLSRESD 960
  961 GERRVATPTA TESQLPWKRQ GDECTDAVQQ NEFPAWASNK EYLAYNSPSA TFLGGINKPK1020
 1021 QPKSVIGLFR RESSSSKAGS VGVGSTGAMD SAASGSETMV VSMSSQPPNA PSTSIHNPRL1080
 1081 DKRSQSISSS SLGAGAHQLG PEGHSGPFPV TASHRRNVRR GSMLELSGDT IPEESSYQHG1140
 1141 HSKSLCEPAD SDEWEGAPLS AAGGANSELL MRMSGREPLL PRPSNTPRAQ IRRMNAGAVG1200
 1201 GAGVSQAGRK NQVTKALLDY EDSETDSDEN DDDEDEDFDS YDDENIVVTT FTTPATGRRP1260
 1261 GSSPGSGSEA NTATTTTTSI RLTRNNDESI I

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle