YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Catsup-PA
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQVADYQC SKLQLYQKLA LVVILGAVLF SLPALCAGQG NPSFKYSREA NENFDPQKAP  60
   61 RAEHHHHHDH DHDHGHHHHG HDHDHDHDHG HDHGHHHHGH DHDHDHDHGH HHHGHDERHT 120
  121 KAKPDLDMST IWLHSIGSTL LISAAPFVLL YIIPLDNSEA MKPRLKVLLA FASGGLLGDA 180
  181 FLHLIPHATH PHSHGEHGHD HGHDHHHHHD GEEHEHGHSH DMSIGLWVLG GIIAFLSVEK 240
  241 LVRILKGGHG GHGHSHGAPK PKPVPAKKKS SDKEDSGDGD KPAKPAKIKS KKPEAEPEGE 300
  301 VEISGYLNLA ADFAHNFTDG LAIGASYLAG NSIGIVTTIT ILLHEVPHEI GDFAILIKSG 360
  361 CSRRKAMLLQ LVTALGALAG TALALLGAGG GDGSAPWVLP FTAGGFIYIA TVSVLPELLE 420
  421 ESTKLKQSLK EIFALLTGVA LMIVIAKFE

Type	Start	End	Confidence
Cytoplasmic	1	18	0.56
Transmembrane Helix	19	37	0.59
Non-Cytoplasmic	38	131	0.98
Transmembrane Helix	132	153	0.93
Cytoplasmic	154	164	0.88
Transmembrane Helix	165	185	0.92
Non-Cytoplasmic	186	222	0.90
Transmembrane Helix	223	242	0.85
Cytoplasmic	243	366	0.96
Transmembrane Helix	367	388	0.94
Non-Cytoplasmic	389	396	0.76
Transmembrane Helix	397	416	0.94
Cytoplasmic	417	428	0.82
Transmembrane Helix	429	448	0.85
Non-Cytoplasmic	449	449	0.93