YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG31792-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.98
Transmembrane Helix	52	76	0.86
Non-Cytoplasmic	77	93	0.92
Transmembrane Helix	94	113	0.91
Cytoplasmic	114	171	0.89
Transmembrane Helix	172	190	0.86
Non-Cytoplasmic	191	195	0.72
Transmembrane Helix	196	215	0.96
Cytoplasmic	216	235	0.91
Transmembrane Helix	236	252	0.78
Non-Cytoplasmic	253	286	0.77
Transmembrane Helix	287	309	0.80
Cytoplasmic	310	688	0.94
Transmembrane Helix	689	710	0.88
Non-Cytoplasmic	711	744	0.92
Transmembrane Helix	745	766	0.90
Cytoplasmic	767	815	0.84
Transmembrane Helix	816	840	0.70
Non-Cytoplasmic	841	843	0.48
Transmembrane Helix	844	864	0.82
Cytoplasmic	865	880	0.87
Transmembrane Helix	881	900	0.51
Non-Cytoplasmic	901	927	0.51
Transmembrane Helix	928	951	0.89
Cytoplasmic	952	958	0.45
Transmembrane Helix	959	977	0.55
Non-Cytoplasmic	978	1318	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISRRILEN DRIFFLRYPF ESLGNKLCSS WANELETNKK NASLLRVLFR VFGRYFVFLG  60
   61 LVLFCLEVIL TVQPMFLMKL ISSFSNPSPT SNGVAYAYAG GVILGSALKV ILMNPYSFAV 120
  121 THLGLKIRVG VSSMIYRKCL RLTKTDLGEI STGHIINLIS NDLGRMDTFI QFTHYLWLAP 180
  181 LQALMVTYLM YQEIGIAAVF GMTFILLFIP LQMYLGKKIS GLRLKTAIRS DKRMRIMTEI 240
  241 IAGIQVIKMY AWELPFEKMV AHARHKEINS IRHVAYAKCL IWSFNRFLTP VSIFLSLVGF 300
  301 VLMGRFLTAE VAFLITAYYN VVRTNMTAYF SVGVTQTAET LVSIKRVQKL LLSGEVVAKD 360
  361 ENVVSNGAEE DLQEAREKLL VTPTPMRAPE KPPHNSEDCV SISELKAKWT TNSPDYTLSG 420
  421 VNLQVHAGAL VAIVGHTGSG KSSLIQAILG ELRVESGEIE VTGSMSYASQ EPWLFSGTVR 480
  481 QNILFGQPMD RRRYDLVVRK CALERDFELL PLKDKTILGD RGASLSGGQK ARISLARSVY 540
  541 RDASIYLLDD PLSAVDSSVA RRLFEECLRG HLRDKIVILV THQLQFLQQA DQIVIMEMGK 600
  601 VKAVGTYESL HKSGLDFGIV LDDPVNDNEA AEDRSRTSSI TDQRRSSVKS VLSHAESCPE 660
  661 DVGEEQKINL QRQQLGRNGL GVYVDYFRAG GGFLSFSVVM TFFVCSQGLA SLGDYFLSPW 720
  721 VSRNEKMVAH NYTTDAKDAD FEMHAAYIYM LITVLSIMVT IKRSFLFFNL AMRASIQLHN 780
  781 SMFRGISRAS MYFFNKNPAG SILNRFSKDM GQVDEMLPTI IMTVIQDFLL FGGNIIVIAI 840
  841 VNPLFLIPAL AFGIVIYYLR SFYLKTSLDV KRLEASTRSP VYSHFAASLN GLSTIRAFGA 900
  901 GSILEAEFDG YQDMHSSASY MFISTSRAFA YWMDIFCVLF IAMITLSFFI FPPSSAADVG 960
  961 LAITQAMGLT GTVQWTVRQS AELENTMISV ERMIEYEEIE PEGPLEATAD KKPHESWPEQ1020
 1021 GKIEFVELSL RYEPYLKSES VLKSLSFVIK PKEKVGIVGR TGAGKSSLIN ALFRLSYNDG1080
 1081 SVRIDDKDTN DMGLHDLRSK ISIIPQEPVL FSGTVRHNLD PFDEYSDDRL WCALEEVELK1140
 1141 DVVASVATGL ETKITEGGSN FSVGQRQLVC LARAILRDNR ILVMDEATAN VDPQTDALIQ1200
 1201 ATIRNKFREC TVLTVAHRLH TIMDSDRVLV MDAGRVVEFG TPYELLTADD TNAFQDLVKQ1260
 1261 TGQATYDTLL KISQRVRVGI CKRIHTYIYK ISFFRNSKNL KNRALCFPLD EPKSLMNN