YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ca-alpha1D-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	618	0.86
Transmembrane Helix	619	638	0.91
Cytoplasmic	639	654	0.74
Transmembrane Helix	655	676	0.86
Non-Cytoplasmic	677	685	0.76
Transmembrane Helix	686	707	0.86
Cytoplasmic	708	723	0.77
Transmembrane Helix	724	742	0.68
Non-Cytoplasmic	743	747	0.62
Transmembrane Helix	748	770	0.88
Cytoplasmic	771	818	0.82
Transmembrane Helix	819	839	0.72
Non-Cytoplasmic	840	855	0.86
Transmembrane Helix	856	877	0.94
Cytoplasmic	878	984	0.97
Transmembrane Helix	985	1004	0.94
Non-Cytoplasmic	1005	1018	0.87
Transmembrane Helix	1019	1039	0.80
Cytoplasmic	1040	1047	0.69
Transmembrane Helix	1048	1067	0.74
Non-Cytoplasmic	1068	1111	0.72
Transmembrane Helix	1112	1134	0.88
Cytoplasmic	1135	1150	0.70
Transmembrane Helix	1151	1167	0.76
Non-Cytoplasmic	1168	1186	0.75
Transmembrane Helix	1187	1207	0.89
Cytoplasmic	1208	1310	0.96
Transmembrane Helix	1311	1329	0.55
Non-Cytoplasmic	1330	1342	0.48
Transmembrane Helix	1343	1363	0.82
Cytoplasmic	1364	1381	0.59
Transmembrane Helix	1382	1403	0.81
Non-Cytoplasmic	1404	1414	0.70
Transmembrane Helix	1415	1441	0.80
Cytoplasmic	1442	1461	0.72
Transmembrane Helix	1462	1490	0.70
Non-Cytoplasmic	1491	1547	0.66
Transmembrane Helix	1548	1569	0.58
Cytoplasmic	1570	1585	0.65
Transmembrane Helix	1586	1611	0.86
Non-Cytoplasmic	1612	1663	0.64
Transmembrane Helix	1664	1685	0.79
Cytoplasmic	1686	1694	0.56
Transmembrane Helix	1695	1717	0.85
Non-Cytoplasmic	1718	1725	0.55
Transmembrane Helix	1726	1744	0.69
Cytoplasmic	1745	1811	0.82
Transmembrane Helix	1812	1831	0.92
Non-Cytoplasmic	1832	1905	0.79
Transmembrane Helix	1906	1926	0.91
Cytoplasmic	1927	2167	0.73
Transmembrane Helix	2168	2186	0.55
Non-Cytoplasmic	2187	2516	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGELVNCI AYDDNTLVIE RKPSPSSPST SRRYLKAETP TRGSRKYNRK SSAKSDLEVV  60
   61 VVKPEHHHQH RSPTITLPVP ANPLTTSASA GSSPTGAGLA AGLGTASGTV LQQSCSALDP 120
  121 PEDSNQPSGT RRRPTSTELA LSNVTSQIVN NATYKLDFKQ RRHKSNNGGS ESGSLTGIAT 180
  181 GPATSPAGPT GPTSSSGKRR KSSCTSCGGG GISAPPPRLT PEEAWQLQPQ NSVTSAGSTN 240
  241 SSFSSGGGRD DNSSYSAVGG DSSSSNSCNC DITGDNSTLH GFGVGDVCSF IADCDDNSED 300
  301 DDGDPNNQDL SSQTLRTAAI VAAVAAAAKE QAQEQSLADC ESFSDRRQDA DEDVRIIQDC 360
  361 CGGNNDSLED VGEVDDNADV VVRKNSRNRP SIRRTCRITE EDDDEDENAD YGDFDREDQE 420
  421 LDDEEPEGTT IDIDEQEQQH DQGDSAEEED DDEDVDEYFE EEEDDTQAFS PFYSSSAELI 480
  481 DNFGGGAGKF FNIMDFERGA SGEGGFSPNG NGGPGSGDVS RTARYDSGEG DLGGGNNIMG 540
  541 IDSMGIANIP ETMNGTTIGP SGAGGQKGGA AAGAAGQKRQ QRRGKPQPDR PQRALFCLSV 600
  601 KNPLRALCIR IVEWKPFEFL ILLTIFANCI ALAVYTPYPG SDSNVTNQTL EKVEYVFLVI 660
  661 FTAECVMKIL AYGFVLHNGA YLRNGWNLLD FTIVVIGAIS TALSQLMKDA FDVKALRAFR 720
  721 VLRPLRLVSG VPSLQVVLNS ILKAMVPLFH IALLVLFVII IYAIIGLELF SGKLHKACRD 780
  781 EITGEYEENI RPCGVGYQCP PGYKCYGGWD GPNDGITNFD NFGLAMLTVF QCVTLEGWTD 840
  841 VLYSIQDAMG SDWQWMYFIS MVILGAFFVM NLILGVLSGE FSKERNKAKN RGDFQKLREK 900
  901 QQIEEDLRGY LDWITQAEDI EPDAVGGLIS DGKGKQPNEM DSTENLGEEM PEVQMTESRW 960
  961 RKMKKDFDRV NRRMRRACRK AVKSQAFYWL IIVLVFLNTG VLATEHYGQL DWLDNFQEYT1020
 1021 NVFFIGLFTC EMLLKMYSLG FQGYFVSLFN RFDCFVVIGS ITETLLTNTG MMPPLGVSVL1080
 1081 RCVRLLRVFK VTKYWRSLSN LVASLLNSIQ SIASLLLLLF LFIVIFALLG MQVFGGKFNF1140
 1141 DGKEEKYRMN FDCFWQALLT VFQIMTGEDW NAVMYVGINA YGGVSSYGAL ACIYFIILFI1200
 1201 CGNYILLNVF LAIAVDNLAD ADSLSEVEKE EEPHDESAQK KSHSPTPTID GMDDHLSIDI1260
 1261 DMEQQELDDE DKMDHETLSD EEVREMCEEE EEVDEEGMIT ARPRRMSEVN TATKILPIPP1320
 1321 GTSFFLFSQT NRFRVFCHWL CNHSNFGNII LCCIMFSSAM LAAENPLRAN DDLNKVLNKF1380
 1381 DYFFTAVFTI ELILKLISYG FVLHDGAFCR SAFNLLDLLV VCVSLISLVS SSNAISVVKI1440
 1441 LRVLRVLRPL RAINRAKGLK HVVQCVIVAV KTIGNIVLVT CLLQFMFAVI GVQLFKGKFF1500
 1501 KCTDGSKMTQ DECYGTYLVY DDGDVHKPRL REREWSNNRF HFDDVAKGML TLFTVSTFEG1560
 1561 WPGLLYVSID SNKENGGPIH NFRPIVAAYY IIYIIIIAFF MVNIFVGFVI VTFQNEGEQE1620
 1621 YKNCDLDKNQ RNCIEFALKA KPVRRYIPKH GIQYKVWWFV TSSSFEYTIF ILIMINTVTL1680
 1681 AMKFYNQPLW YTELLDALNM IFTAVFALEF VFKLAAFRFK NYFGDAWNVF DFIIVLGSFI1740
 1741 DIVYSEIKSK DTSQIAECDI VEGCKSTKKS AGSNLISINF FRLFRVMRLV KLLSKGEGIR1800
 1801 TLLWTFIKSF QALPYVALLI VLLFFIYAVV GMQVFGKIAL DGGNAITANN NFQTFQQAVL1860
 1861 VLFRSATGEA WQEIMMSCSA QPDVKCDMNS DTPGEPCGSS IAYPYFISFY VLCSFLIINL1920
 1921 FVAVIMDNFD YLTRDWSILG PHHLDEFIRL WSEYDPDAKG RIKHLDVVTL LRKISPPLGF1980
 1981 GKLCPHRMAC KRLVSMNMPL NSDGTVLFNA TLFAVVRTSL SIKTDGNIDD ANSELRATIK2040
 2041 QIWKRTNPKL LDQVVPPPGN DDEVTVGKFY ATYLIQDYFR RFKKRKEQEG KEGHPDSNTV2100
 2101 TLQAGLRTLH EVSPALKRAI SGNLDELDQE PEPMHRRHHT LFGSVWSSIR RHGNGTFRRS2160
 2161 AKATASQSNG ALAIGGSASA ALGVGGSSLV LGSSDPAGGD YLYDTLNRSV ADGVNNITRN2220
 2221 IMQARLAAAG KLQDELQGAG SGGELRTFGE SISMRPLAKN GGGAATVAGT LPPEANAINY2280
 2281 DNRNRGILLH PYNNVYAPNG ALPGHERMIQ STPASPYDQR RLPTSSDMNG LAESLIGGVL2340
 2341 AAEGLGKYCD SEFVGTAARE MREALDMTPE EMNLAAHQIL SNEHSLSLIG SSNGSIFGGS2400
 2401 AGGLGGAGSG GVGGLGGSSS IRNAFGGSGS GPSSLSPQHQ PYSGTLNSPP IPDNRLRRVA2460
 2461 TVTTTNNNNK SQVSQNNSNS LNVRANANSQ MNMSPTGQPV QQQSPLRGQG NQTYSS