YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACXE-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.98
Transmembrane Helix	47	68	0.95
Non-Cytoplasmic	69	74	0.84
Transmembrane Helix	75	98	0.91
Cytoplasmic	99	106	0.90
Transmembrane Helix	107	127	0.92
Non-Cytoplasmic	128	133	0.82
Transmembrane Helix	134	156	0.73
Cytoplasmic	157	159	0.56
Transmembrane Helix	160	184	0.81
Non-Cytoplasmic	185	189	0.50
Transmembrane Helix	190	220	0.69
Cytoplasmic	221	577	0.97
Transmembrane Helix	578	599	0.89
Non-Cytoplasmic	600	608	0.71
Transmembrane Helix	609	629	0.94
Cytoplasmic	630	662	0.96
Transmembrane Helix	663	683	0.89
Non-Cytoplasmic	684	706	0.92
Transmembrane Helix	707	728	0.87
Cytoplasmic	729	737	0.63
Transmembrane Helix	738	758	0.86
Non-Cytoplasmic	759	771	0.74
Transmembrane Helix	772	787	0.89
Cytoplasmic	788	1117	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRSLGNCQL NYSKERMWEP GYLKAKCAEL RLESEFRLYR IRLWKSYLLT FFMLHIFVTS  60
   61 VHCALLLATI ERRSIIYFDV ALSIGCALVL ILVLSVNFCD EFIAKHTWYM YASSIFASLT 120
  121 LVFADLTESI YHTYAHSWIL GTFYDTYIIY MIYMFLPIHF ISGAVLLALL VSGLYILYFV 180
  181 IFIAQGFAQF ASALFSVGGM SVDIVHYLCL NLVGIFYRVM NDTVVRSSFL DRHQYIKEKI 240
  241 WLRNARLQEK QLLDSILPPQ ISLPLQKDIQ GRIVMAKQGI HSWTAMERTM AIQIHPDVSI 300
  301 LYADVVNYTH LTTTLTVEML VKVLHDLYGR FDLAAYRYKV QRIKFLGDCY YCVAGLSDPD 360
  361 PDHANNCVIL GLSMINHIME VRDIHGLDIN MRIGVHSGNL FAGVIGEAKL QFDIWGLDVT 420
  421 IANVLESTGV PGCVHISGAT LNNLDVNRFD IEDGPEEARD HPLLKKYRIR SYIIRQDLHM 480
  481 DDEDSDEFLG DLHSISLCNM GAQPRISDSA NQSLRALFHE ELREEFRKMP VSAFSPKRLL 540
  541 GICRFNTGKE VPAHQNLNIC LTFTDPILER AYLKQTDYMY KYSIILSASV GCSLVYIELM 600
  601 DTQMICSSCF VLPASVATIQ CILALIAWYK KYCWTRYGRN NVPHHYNGFS CFIFRIHDKI 660
  661 LNSLPIRICI YLFLMISSFF MSCQREEFEM AYIEERLFHY EQEAHICFHP WVTTNMLSLM 720
  721 ICLTFTFAHI PIMVKTAVAI LETLAYLLLI FFQFDFVFHH SVTTNPYFKS EYAHALLICI 780
  781 TFLIMFVKER QIEFTNKVNF NWRVDLRKEE NAASLTNHSI IIILNNILPS HIVDVYLNSL 840
  841 AKHELYFENY RMVSVMFAML INFEMDLRSL RVLNEIIAEF DTLLLFYKEY YTVEKIKIVG 900
  901 CTYMAACGLD LNFAGSTSTN RKESIPPTEF NEEQSRRILF QQSNEDLDEV VFVMTSYALD 960
  961 MMRTLAKSNE AYQSIAGDRN ITDGTIAIGI SSGEVMAGIV GASQPHYDIW GNPVNMASRM1020
 1021 ESTGLPGHIH VTEETSEILQ QFGITCSYRG MTFVKGRGKI PTYLVGIDEN LNFIPQKATR1080
 1081 FPSHQERSTV ISLQSTYTHA ENNNSIASTS RHTLQSL