YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACXA-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.99
Transmembrane Helix	55	77	0.91
Non-Cytoplasmic	78	85	0.84
Transmembrane Helix	86	109	0.89
Cytoplasmic	110	117	0.90
Transmembrane Helix	118	138	0.93
Non-Cytoplasmic	139	147	0.78
Transmembrane Helix	148	166	0.90
Cytoplasmic	167	173	0.78
Transmembrane Helix	174	195	0.91
Non-Cytoplasmic	196	211	0.82
Transmembrane Helix	212	230	0.88
Cytoplasmic	231	586	0.99
Transmembrane Helix	587	607	0.94
Non-Cytoplasmic	608	613	0.83
Transmembrane Helix	614	638	0.89
Cytoplasmic	639	671	0.98
Transmembrane Helix	672	694	0.89
Non-Cytoplasmic	695	721	0.94
Transmembrane Helix	722	742	0.91
Cytoplasmic	743	750	0.80
Transmembrane Helix	751	771	0.96
Non-Cytoplasmic	772	1112	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKNTYKTP YRERFRRCNL EYTNERLWEQ SYLKARCKEL HLEEEYMKYK IRLMISSLTV  60
   61 FVPMLILLIV ALQVIIWSFT EYTKYIYINA IFDLGSLILV TGLLSINFFE DFVIRHRWVM 120
  121 TFTSTLSAYV VVLGDIAFNT YYYYKSNWPL NTLYDVFVLC MIYMFLPIPS SKAAALLAIS 180
  181 VSLTYVIYFI HFMAFNEHNV AKYVHGLDIV SIDFFHYLGF NMMGIFFRIM NDTMVRSSFL 240
  241 DRYQFITEEI WLRQARRQES LLLDSILPPQ IAKPIQKSIK EKIIQPDNDF YHLGTSRTAE 300
  301 NFMSIQIHND VSILYADLVN YTQLTTTLTV EKLVKVLHDL YARFDLAALS FKVQRIKFLG 360
  361 DCYYCVAGLG ESDPDHATMA VSLGISMIAN IKEVSVNRSL NIGMRIGVHS GTLFAGVIGK 420
  421 AKLQYDIWGA DVNIASRLEA TGSPGYVHVS GRTLSSLNAE EYNIYPGTES AQKDPVLQKH 480
  481 PMSTYLLTAI PSLDSDKTIS IVEGVPNLDL QTVGSNRKSQ ILKPNLLSHE MREEFRKMPV 540
  541 GGFKFQFPWS RRERNLKNEK VERDLGIFCV AFKDKSVEWN YLHQPDYIFK YSVALGWGIG 600
  601 CCLIYIQSVN NSDIFYTGVV INIIAFFVLT FLLFICWYKK VCWWHSGQNE HRSYGKLSCA 660
  661 IFHLFEKIQH SFVLRLTVYM MIILCYYMVI SLILMSCEKD QYELDIIESK LYNYDMDPFT 720
  721 CFHPWAYTNM MALILGMSYT FARIPFALKT FIGCAEAVVF VLVVCFQYAF IFEHSVTTSP 780
  781 YLKAEIAHSC RVCMMLITMY AKERQSEFNT KMNYKLNLDL QNKQKSADVT NQSIIILLNN 840
  841 ILPSHVVEVY LSSIAKHELY YENYRMVSVM FAMLTNFQMD LPSLRVLNDI ITAFDRLLSA 900
  901 YKQYYVVEKI KVVGCTYMAA CGLDFSLIEN LDSNSNFGST SLSSELEQVR SRLESSIKEK 960
  961 NHDEVAFIMA TFALDLMRVL SVCNKAYAGE PFDRALSTGE IRIGISTGQI MAGVVGASQP1020
 1021 HYDIWGNPVN MASRMESTGL SGHIQVTKET AQTLEEFDVM CYYRGLTFVK GRGEIPTYFV1080
 1081 GIDKDLKFMS KKIDRLSENP SNPDLNHDLD GS